Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0943 ATGGAAGAACCATCGATGGAGGAAGAAGACAAAGAGAGGACTACGTGCGTCGAAAAGAACTTAGAAGACGAGAAGATTGTATCATCGGGAGGTATGACtcggaaggagaagaggaaagcCATCAAGAGACTGAAGCGTAAGCAAATTAGGAAGGATATTGCCGCCAGGGAGCGCGAGGAGGAGGAGGCTCGGCTCAACGATCCCGAGGAGCAGAGAAGACTATTGTTGATGGAGAAGGAAGAGGCCGAGAGGGTTGAAAGGGAGACGAAGCTGTttgaggagagagaaagggcTTGGATTGAGGCTAtcgagaagaagatgaaggaggCTGCGGAAGAAGAGCAGAGGAAGCTTCTCGAAGAAACTCATAAGCAACAGCAAGATGAGAATGTatttaatgatgatgatgaatgggaATATGTGGAGGAAGGGCCTGCAGAGATTATTTGGCAAGGAAACGAGATCAtcttgaagaagaaaaaagtgaGGATTCCAAAGAAAGATTTAGGCCACCAAATTCAGGAGGACCCCAATAGACCTACATCAAATCCCTTGCCCCCAGATTCATATGCTTTTGCCGATCACACAAATTCATCAATAGCTTCTGCACAGGAGGTTCTTGAGAGTGTTGCACAACAAGTGCCGAATTTCGGAACTGAACAGGATAAAGCTCATTGCCCCTTTCATTTGAAAACTGGAGCATGCCGCTTTGGTCAACGTTGTAGCAGGGTCCATTTTTACCCTGATAAAGCATGCACACTTCTTATGAAAAACATGTACAATGGTCCTGGCCTTGCTTGGGAGCAAGATGAGGGGCTTGAGTATACAGATGAGGAGGTTGAACGATCTTTTGAAGAATTTTATGAGGATGTTCACACAGAGTTCTTGAAGTTTGGAGAAATTGTGAACTTTAAGAATGTTGCCGGCGACTCACAGACATTGACGACGGCGATCTCCGACCACGGTTCACGGTGGTTCACCGGAAAAGGACGACAATTTCTGTTCTTCTGGCTGGTTTTGCTTTCCTACTCTTGCTCTGTGCGACGGTTTCTCTGTTTCATATTGACGGCAGAGCATCTCCGGGCATGGTGGGTCGCCGGAAATAACATCTCGGTTCTGCTTTCTGGTTTTTCATTCTCAAAGGGGTTAAATAGAGTGCTGTCTCGCCATTTTTCTGCTCTTTATCACATTTTGGTGGTGGCTGGTGGCCTTAACAATAGCTGTCTTCTGCTGCCATACTTTGCTATTGGGCAGAAGAATGATAGCGGAGGAAGGTTGCCTTTGTGTAGATTAAATAAGAAGTCAAAGGTGGTTATGGGGACACAACGCTTAGCTATTGAAGCAAAGACATTTGATTTGTCATTGGAACAATCGGGGTCTTTCTTCCGTCTTAGCGGGAAGACCGCAAGGGCATTAGTGATGGGGAAAGGTGCACGGATAACTACGGAGGTTAAGCAAGGAAGGCTATTATGCTGGGTTCCACGAATTCAGAGCCAGGATGGAAGGCTATTATGCTGGGTTCCACGAATTCAGAGCCAGGTTCAACAAGGATCTATTACCCAAAAGACTGGTGTGCAGACCAATCCTGTGCAACGTGATGTTGGAGTTCAAACTGAGGAGGCTGAGATGGTTACATTAGGAGATGTAAGAGTTGTCGAACCAGCAGGGAAGGGTGAGATGGGAACTAAGGTGGGGGAGAAAGGTGAGCCTAAAAAGGCTGAAGAAGGGGAGTTCTTTGATGAGGCTTCAATAATTTCTTTCCTTGACAATGAAGAGGGTCTCCTAATTGAGCAATTAGAGAAGGAATATGAAGAACAGGAGAGAGATCAGAAGATGAGGCATGATGATGCCTTTGAAGGGGTGGCTTCTCTCCTAGGGATGGATGTGAGTGAAGGCAACATAAATGATAATAGTAGAGGCATTCTCACTATGCCAGAGGAAGGTAACATGACACATGGGAGTATACACACAGAGGGTGTGAAAACTTTTGGATAA 1995 0.4366 MEEPSMEEEDKERTTCVEKNLEDEKIVSSGGMTRKEKRKAIKRLKRKQIRKDIAAREREEEEARLNDPEEQRRLLLMEKEEAERVERETKLFEERERAWIEAIEKKMKEAAEEEQRKLLEETHKQQQDENVFNDDDEWEYVEEGPAEIIWQGNEIILKKKKVRIPKKDLGHQIQEDPNRPTSNPLPPDSYAFADHTNSSIASAQEVLESVAQQVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPDKACTLLMKNMYNGPGLAWEQDEGLEYTDEEVERSFEEFYEDVHTEFLKFGEIVNFKNVAGDSQTLTTAISDHGSRWFTGKGRQFLFFWLVLLSYSCSVRRFLCFILTAEHLRAWWVAGNNISVLLSGFSFSKGLNRVLSRHFSALYHILVVAGGLNNSCLLLPYFAIGQKNDSGGRLPLCRLNKKSKVVMGTQRLAIEAKTFDLSLEQSGSFFRLSGKTARALVMGKGARITTEVKQGRLLCWVPRIQSQDGRLLCWVPRIQSQVQQGSITQKTGVQTNPVQRDVGVQTEEAEMVTLGDVRVVEPAGKGEMGTKVGEKGEPKKAEEGEFFDEASIISFLDNEEGLLIEQLEKEYEEQERDQKMRHDDAFEGVASLLGMDVSEGNINDNSRGILTMPEEGNMTHGSIHTEGVKTFG 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0943 664 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 245 IPR000571 GO:0046872
Sto13g0943 664 Coils Coil 100 129 - -
Sto13g0943 664 Coils Coil 44 66 - -
Sto13g0943 664 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 34 306 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto13g0943 664 MobiDBLite consensus disorder prediction 50 68 - -
Sto13g0943 664 Gene3D - 251 329 IPR012677 -
Sto13g0943 664 PRINTS U2 auxiliary factor small subunit signature 226 245 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto13g0943 664 PRINTS U2 auxiliary factor small subunit signature 245 265 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto13g0943 664 PRINTS U2 auxiliary factor small subunit signature 281 296 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto13g0943 664 Coils Coil 75 95 - -
Sto13g0943 664 MobiDBLite consensus disorder prediction 644 664 - -
Sto13g0943 664 MobiDBLite consensus disorder prediction 8 35 - -
Sto13g0943 664 MobiDBLite consensus disorder prediction 1 68 - -
Sto13g0943 664 ProSiteProfiles Zinc finger C3H1-type profile. 220 248 IPR000571 GO:0046872
Sto13g0943 664 Coils Coil 589 616 - -
Sto13g0943 664 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 34 306 - -
Sto13g0943 664 MobiDBLite consensus disorder prediction 168 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0943 Sto-Chr13 9933711 9940919 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto13g0943 zf-CCCH 0.00018 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0943 K24273 - pop:18098363 383.645