Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0939 ATGGGATACAATTTTGAAATACAATATAAGCCGGGCGTGGAAAACAAAGCAGCTGATGCTTTATCAAGGCAAGGGGAAAAGCTTGAACTGAAGGCCTTTTCAGTGTGGAGGTTTGATGAGTTTGATGAATGGGAAAAAGAGATTAGGTGTGAATTTGTTAATTTGAACCGATGGAAGGTTGCCATATGTGGGGAGTTTATGAAGTCAGGGTTCAAGACTTGTTCTCATGGATCTGCTTGCAATTTTATTCATTGTTTCCGTAATCCTGGAGGAGATTATGAATGGGCTGACTCTGATAAACCACCTCCAAAATATTGGGTGAGAAAGATGGCTGCTTTGTTTGGTTATTCTGATGATCAAGAGAAATTGATGGAGCAAGAAATTTTGAGTGTGAAGAACAACagcaagaaacaaaaaacaGATTCAGATAGGTACCACTCAAGGTCAAGATCCAGTTGTTCTGGTAGAAGAAAGcatgaaaatgaaagaaagcgAAGCAGAACACCGGGTGAGGAAATATATGAACAAAAGACCCACTTAAAAGACAACTATAAAAGGAAAGGCAGAACCTCTGATACTGACTCAAACACGGAACACTTAGATAAGGAGGGAGACAGGAAAAAACGCCATAAACATgctaaaaaaaactcaattgaTAGGGACAAAGATGACAAGAGAAGCCATGAAGGTGATTCTGATGTAGATCAGGATGCTATACCTGGGAACAGAAGAAAACTGCAGAGCAGTGAAGGAAGGAACTCGAGACTAAGGGACAGGGACATCGATGAGGCTGGACTAGGGGATTGTTCCGACAGGGATACAGATAGGAAAAGTCACCACAAAAGGAAAAGCTCTAGACATCGAGGCAGGGACTACAGAAATGCGACAGCTAGTGACACTGAATCTGACAGAAGTTTGTTTGATAAAGATGGGGACATGGAAACACAGCATGGTTTCTCTAGGAAAAGCTCGAAACACAGAAGATCTGATCTTCTAGATGATTATGAAGAGTATGAGAACAAAAATGATGAAGTTAATGGAGACTGTTCAATGAGAAAGAAAGATAGACGAGCACGTCATCTTGATACAAGGAAATATTAA 1101 0.3878 MGYNFEIQYKPGVENKAADALSRQGEKLELKAFSVWRFDEFDEWEKEIRCEFVNLNRWKVAICGEFMKSGFKTCSHGSACNFIHCFRNPGGDYEWADSDKPPPKYWVRKMAALFGYSDDQEKLMEQEILSVKNNSKKQKTDSDRYHSRSRSSCSGRRKHENERKRSRTPGEEIYEQKTHLKDNYKRKGRTSDTDSNTEHLDKEGDRKKRHKHAKKNSIDRDKDDKRSHEGDSDVDQDAIPGNRRKLQSSEGRNSRLRDRDIDEAGLGDCSDRDTDRKSHHKRKSSRHRGRDYRNATASDTESDRSLFDKDGDMETQHGFSRKSSKHRRSDLLDDYEEYENKNDEVNGDCSMRKKDRRARHLDTRKY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0939 366 MobiDBLite consensus disorder prediction 216 240 - -
Sto13g0939 366 MobiDBLite consensus disorder prediction 342 356 - -
Sto13g0939 366 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 45 360 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto13g0939 366 SMART c3hfinal6 57 86 IPR000571 GO:0046872
Sto13g0939 366 MobiDBLite consensus disorder prediction 290 335 - -
Sto13g0939 366 MobiDBLite consensus disorder prediction 248 278 - -
Sto13g0939 366 MobiDBLite consensus disorder prediction 129 366 - -
Sto13g0939 366 ProSiteProfiles Zinc finger C3H1-type profile. 57 87 IPR000571 GO:0046872
Sto13g0939 366 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 45 360 - -
Sto13g0939 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 58 86 IPR000571 GO:0046872
Sto13g0939 366 Coils Coil 321 348 - -
Sto13g0939 366 MobiDBLite consensus disorder prediction 129 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0939 Sto-Chr13 9893362 9909323 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto13g0939 zf-CCCH 1.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0939 K24273 - gmx:100789091 240.736