Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0711 ATGATGGCATCTCTTGGAAGCACACGGACATTAATGGAGAAAAACGGCTTCACAGAAAAGCGCAAGTGCACGCTCGACCGCCTTGTgctcaagaacttggCGAACATAATAgtggctcgctcgttcggagaacacattcacgatgtcactctgcaacGCCTTTGTTCAGAAAACGctcttaattttcttctttctcgGTTGGAATTAATTAGTCTCATCTTTAATGTTAAATTGGGTTTTatcctaaccatagaaattttttattttgaaatatctgATGAGATTGTTTTGGATTTTGATTATTGTAGTTTCTCTTTGGGGCCAAAGTGTATTATATGTGGCCGCTATGGTGAGTATATATTAGCACCAATTTTATCATTCACTTCCTGTAACCTTCCTGACAAGCTCCTGCACAATATAGAAGCGGCAAGATATGACATGCCTACACCTGTCCAGATGCAGGCAATCCCTGCTGCTTTGATGGGCAAAAGCATGCTAGTTTTAGCAGATACAGGATCTGGGAAGTCtgcttcatttttaatttcaataatttctcGCTGTGCAAGTTTTCGCCTTGCGCATCCTTCTGATAAGAAGAAGCCATTAGCAATGGTGTTAACACCTACTAGAGAACTCAGTATACAGGTTGAAGAGCATGCTAAATTGCTAGGAAAGGGATTGCCTTTTAAAACTGCGCTTGTGGTTGGTGGTGATGCCATGGCTAGACAACTCTATCGCATTCAGCAAGGAGTAGAACTGATTGTGGGAACCCCAGGAAGGCTTGTTGATCTTTTAACTAAACATGAGATTGACTTAGATGATATGATGATATTTGTTGTCGATGAGGTGGACTGCATGCTGCAAAGGGGTTTTCGAGAGCAGGTCATGCAGATATATAGGGCTATGCCCCAGCCCCAGGTCTTGATGTATTCTGCAACAATCTCACATGAGTTAGAGAAGATGGCAAACTCTCTAGCGAAAGGTACTGTGGTTATATCTGTTGGTGAGCCTAATAAACCAAATAATGCTGTGAAGCAGCTAGCTATTTGGGTTGAGTCAAAACAAAAGAAGCAGAAGCTGTTTGACATTTTGGTGAGTAAGCAACACTTTAAGCCACCCGTCATTGTATATGTGGGGTCCAGACTTGGGGCAGATCTTCTGGCCAATGCCATTACTGTCACCACTGGAATTAAAGCACTATCAATTCATGGGGAGAAGTCCatgaaggaaaggagagaaatAATGGGGTCGTTTTTGGTGGGTGAGGTCCCAGTGGTTGTGGCTACTGGGGTCTTGGGTAGGGGAGTTGATCTATTGGGTGTTAGACAAGTAATTGTGTTTGACATGCCTAATTCCATTAAGGAGTATGTACATCAGATTGGTAGGGCGTCTAGGATGGGAGAGGAAGGTCAAGCCATAATTTTTGTGAACGAGGAGAATAAGAATGTCTTCGCTGAGTTGATTGAGGTCTTAAAATCTACTGGAGCAGCTGTGCCTCGGGAACTTGTCAACTCACCATATGCCAAGGGATTTTTCTCTGTGGGCAATGCTCCCAGAAAGAGGAAGAATAGGCCATGA 1578 0.3916 MMASLGSTRTLMEKNGFTEKRKCTLDRLVLKNLANIIVARSFGEHIHDVTLQRLCSENALNFLLSRLELISLIFNVKLGFILTIEIFYFEISDEIVLDFDYCSFSLGPKCIICGRYGEYILAPILSFTSCNLPDKLLHNIEAARYDMPTPVQMQAIPAALMGKSMLVLADTGSGKSASFLISIISRCASFRLAHPSDKKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGDAMARQLYRIQQGVELIVGTPGRLVDLLTKHEIDLDDMMIFVVDEVDCMLQRGFREQVMQIYRAMPQPQVLMYSATISHELEKMANSLAKGTVVISVGEPNKPNNAVKQLAIWVESKQKKQKLFDILVSKQHFKPPVIVYVGSRLGADLLANAITVTTGIKALSIHGEKSMKERREIMGSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIIFVNEENKNVFAELIEVLKSTGAAVPRELVNSPYAKGFFSVGNAPRKRKNRP 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0711 525 Gene3D - 335 507 IPR027417 -
Sto13g0711 525 Gene3D - 114 334 IPR027417 -
Sto13g0711 525 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Sto13g0711 525 Pfam Helicase conserved C-terminal domain 357 467 IPR001650 -
Sto13g0711 525 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 23 507 - -
Sto13g0711 525 Pfam DEAD/DEAH box helicase 149 320 IPR011545 GO:0003676|GO:0005524
Sto13g0711 525 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 23 507 - -
Sto13g0711 525 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 332 IPR014001 -
Sto13g0711 525 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 506 IPR001650 -
Sto13g0711 525 CDD SF2_C_DEAD 344 476 - -
Sto13g0711 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 484 IPR027417 -
Sto13g0711 525 SMART helicmild6 385 467 IPR001650 -
Sto13g0711 525 SMART ultradead3 144 347 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0711 Sto-Chr13 6837731 6845127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0711 121 487 Eukaryotic Initiation Factors Gene Family AT3G19760 27.957 1.32e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0711 K19466 - gmx:100781473 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0711 13 6837731 6845127 Sto13g0711 13 6837731 6845127 ECH