Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0641 ATGGGGCACAAACTCTTTGAAGATACCTATGATAAGCCTCTCCGTAAGGATGGAATCTTAGGGATGCCTGGGGTTTTCCGGAGGAAGATCGTGGGTTCTCAAGTACTTGACCTTTTTGGACGAAGAGACAAGTCAAGGAGACCGCGATACGTCACTAATCCCGAGGTCGTGATGCCTTGTTCATTGGATTTTCCCTACGCCCTTAGTCGAAGCAGGTTTGGATCGGGCTTTTACTTTCCAGTCAAAGTTGGGTCTTGCAGGTCCCTTGCTCCCTTAGTCAAAGCAGGATTAGATTGGGCTTCTACTTTCCAGTTAAAGTTGGTCTCGCATTTGCCTACTCCCTTGGTCGAAATAGAGGAAGAGAAAATCCAACATGATTTCATGTTTCCTACTCCTCTACACCCATCACTATCAGATCAAACCCCAAAGCAAGAAGCTTCTCCTTATTCTCCCTATCCCTTTCCCTATCATATCACCACCACTCAAGATACTACCACCTTCCCAATCCCACAAGTAACTATCTCTTCCGGTTTGATTGACAATAATACCTCCTCTCAGCCTACATCTCAagGGaatattaatataagaaaaagacATTATAGAGGAGTTAGGCAGAGACCTTGGGGAAAATGGGCAGCCGAAATTCGAGACCCTAAAAAGGCAGCTAGAGTGTGGCTTGGAACGTTTGACACGGCAGAGGATGCAGCCGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGCAACAAAGCCAAACTTAATTTTCCCGAACGTGTGGCCAATTTCGCAACACATGATCACAACACTTCGTCGTCGGCTTCTCCTACGGCGTCGTCGATTCCTCGTCAACCTCCGCCGGTGCCGCCGGCGGCGGACGACCAGGGGTTTCCAGACCTAATGCAGTACGCTCAGGATGAACAAATGGGAGGTGGTGGTAGTTCTTATGGTTCTTGGTTTTTTGACAAAGGGAGTAGTGATTTTGATGGAAGCAACACGAGGCGATGA 1005 0.4706 MGHKLFEDTYDKPLRKDGILGMPGVFRRKIVGSQVLDLFGRRDKSRRPRYVTNPEVVMPCSLDFPYALSRSRFGSGFYFPVKVGSCRSLAPLVKAGLDWASTFQLKLVSHLPTPLVEIEEEKIQHDFMFPTPLHPSLSDQTPKQEASPYSPYPFPYHITTTQDTTTFPIPQVTISSGLIDNNTSSQPTSQGNINIRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAAAYDAAALKFKGNKAKLNFPERVANFATHDHNTSSSASPTASSIPRQPPPVPPAADDQGFPDLMQYAQDEQMGGGGSSYGSWFFDKGSSDFDGSNTRR 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0641 334 Pfam AP2 domain 199 248 IPR001471 GO:0003700|GO:0006355
Sto13g0641 334 Gene3D AP2/ERF domain 198 258 IPR036955 GO:0003700|GO:0006355
Sto13g0641 334 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 163 282 - -
Sto13g0641 334 MobiDBLite consensus disorder prediction 265 315 - -
Sto13g0641 334 PRINTS Ethylene responsive element binding protein signature 200 211 IPR001471 GO:0003700|GO:0006355
Sto13g0641 334 PRINTS Ethylene responsive element binding protein signature 222 238 IPR001471 GO:0003700|GO:0006355
Sto13g0641 334 ProSiteProfiles AP2/ERF domain profile. 199 256 IPR001471 GO:0003700|GO:0006355
Sto13g0641 334 PANTHER DNA-BINDING DOMAIN 163 282 IPR044808 GO:0003700|GO:0009873
Sto13g0641 334 CDD AP2 199 257 IPR001471 GO:0003700|GO:0006355
Sto13g0641 334 SUPERFAMILY DNA-binding domain 199 257 IPR016177 GO:0003677
Sto13g0641 334 SMART rav1_2 199 262 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0641 Sto-Chr13 5933252 5945913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0641 180 309 AP2-EREBP Transcription Factor Family AT5G61890 56.923 4.35e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g0641 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0641 - - ccaj:109818971 162.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0641 13 5933252 5945913 Sto13g0641 13 5933252 5945913 ECH
Sto8g1624 8 10434009 10435142 Sto13g0641 13 5933252 5945913 ECH