Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0624 ATGTCCATCTTGCCCTCACAAACCCAGGCATCAACCTCGTCTTCTGAATCTCATTTatctccaaaccctaattcACAACATGGAAACTCACCTCCGTCTCCTTCATccctctcctctcttccccttgaAGTTCAATCATTCGGGTCTCTCCGGATCTCCGATTCCCAATATCCCGTCGCTATGTCAGACGTCAATTCAGGTCCATCTTCTCCAGCTACAGAAGATTCTGGTGGATCTTCCGAAAAGGTGACTGAGTTAGGATCCCCAAGTGGTATGAAGACTTCGCCTCATCAAAACTCCAGAACACATTCTAAGAGTTACTCAGGAAGGCGGGTGGTTAAATCATCCCCATCAGCTGGGAAGAGAACAGGAACAATTGCTTCTCCTGGAGATCAACAAAATACTGGGTCTGTAAATTCTAATGGTAGTACCCCTTCATCAGGAAGAAAATCTCAGATGGTTAATGGTAATCACTTGCTGAACTTTCATTATGATCCTATATCTCGTCCTCAACCAAGGGGTCCTCCTCCTCCCCCACCAAGAAGGCAGCAGAAGAAAAAACCATACAACAAAGATTTATTTCTACAGGCAAATTACAAATTTGTGGTGTTAGATTCAGGAAACTGTTCGCCTGAGTCTTTGGACCCAGATAAAATGTTACAGTGGGAAGATATTATTTGTCTAAGGTATTCCACACCATTCTCAGTGCAGTGTCCAATTTGTTTGGAGTATCCTCTGTGTCCACAAATAACCTCTTGTGgacatatattttgttttccaTGTATCTTACAATACTTGATGATGGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGATGTCCTTTATGCTTCGTGATGATATCTGCAAAGGATTTATATACCATTTACATTGAAAATGTGAAGCAGTATCGAGTGGGAGATAATATTGAATTCACACTTCTAACTCGAAAAAAGGATTCCTTTACTCTGtgtcaaaaaaataatggaGAGACTGATGTCaaattatgtgatcccttttcTAAGTTCACTCTCACATCAGATGTGGATCTTTCTGTGAGACAGGCAATGTCAGATTTAGATGGTTGGCTGGCCAAAGCTGATTCTGGTCTTGTTGATGACCTGGAGAAACTTCCATATGTTTGTGCTGCAATGGAACAATTAGAACAGAGGAAGAAATATTGGAATGAGCACAGGGCTTCTGATGGTGACAAACCCTCTAGAATTATTGACTGTGGATATCACAAACTATCAACAGCTATAAATACTACTGATAATGATGAAGCCCATTCTAATGCATCAGGAACTTCCTTTAGAGATTTCCATTACCAAAGTAAGGGTATAATATTGGATAAGTCAAATGCAGAAGCCTGTTCAGATCGAACTCTGGATGTGGACAAAGTACTTGAGCAAGAAGCAAATTTGTCTTCTTCCTATGAGGAGAAAAATGATATTCCAAGGAATTCAAATGGTTTTGGTGATGCAAAGGAAAGTGACTCTTACAACTTCTACCAGGCTTCTGATGGTCAGCATCTCATTCTTCATCCACTGAATGTGAAGTGTCTACTTCATCATTATGGGAGCTATGATCTGCTTCCAAACAGAATAAGTGGAAAGATACTGCAATTGGAGACAAGCACTCAGTCCGAGGCCATGAGGAGGCGATACCGATATTTGAGCCATTTTCCTTTGACAACAACATTTCAGCTTTGTGAAATTGATTTGAGTGAGATGTTACCTCCTGAATCACTGGCCCCATTCATGGATGAAATGAAGAAGCGTGCAAATCAGAGGAGGCAACTTGCAAAGAAGgaacaaaaggagaaaatCAAGGCTGAAGCTGCTTCTACGTATGCTCTTCCCATACCAACCAATTTTCGACGTATGTATCATGACAATACTCCCACATTCTCCATGGACGATTTTGAAGCTTTGGGGAATTCTGCTGTGTCATCTAGTCCTCCAGTTGTTGGGGAGAGAAATTTGTTTTCTAGTGTTACAAGGCTTGGTTTTGCTGCTGGGCATGATTCTCCATCTTTGAACATTCAAGAAACCAATGGTCAACAGAATCACAATATGACAACTGATTCTTCTAGCACGACAGGTTTGAGAAATGTGGAGACACCATCATTTGCCCATGTTATATCCAGAGCAGAGTCTATTAGTAGCTTGAATGGACCAAAGACAAGTGACTTggggaagaaggggaagaaacCAACTCGTGTGCTTCTGTCGACAGCAGGCGGTAGGAGATATTGA 2259 0.3918 MSILPSQTQASTSSSESHLSPNPNSQHGNSPPSPSSLSSLPLEVQSFGSLRISDSQYPVAMSDVNSGPSSPATEDSGGSSEKVTELGSPSGMKTSPHQNSRTHSKSYSGRRVVKSSPSAGKRTGTIASPGDQQNTGSVNSNGSTPSSGRKSQMVNGNHLLNFHYDPISRPQPRGPPPPPPRRQQKKKPYNKDLFLQANYKFVVLDSGNCSPESLDPDKMLQWEDIICLRYSTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDHKGDCWKRCPLCFVMISAKDLYTIYIENVKQYRVGDNIEFTLLTRKKDSFTLCQKNNGETDVKLCDPFSKFTLTSDVDLSVRQAMSDLDGWLAKADSGLVDDLEKLPYVCAAMEQLEQRKKYWNEHRASDGDKPSRIIDCGYHKLSTAINTTDNDEAHSNASGTSFRDFHYQSKGIILDKSNAEACSDRTLDVDKVLEQEANLSSSYEEKNDIPRNSNGFGDAKESDSYNFYQASDGQHLILHPLNVKCLLHHYGSYDLLPNRISGKILQLETSTQSEAMRRRYRYLSHFPLTTTFQLCEIDLSEMLPPESLAPFMDEMKKRANQRRQLAKKEQKEKIKAEAASTYALPIPTNFRRMYHDNTPTFSMDDFEALGNSAVSSSPPVVGERNLFSSVTRLGFAAGHDSPSLNIQETNGQQNHNMTTDSSSTTGLRNVETPSFAHVISRAESISSLNGPKTSDLGKKGKKPTRVLLSTAGGRRY 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0624 752 ProSitePatterns Zinc finger RING-type signature. 253 262 IPR017907 -
Sto13g0624 752 MobiDBLite consensus disorder prediction 169 183 - -
Sto13g0624 752 Coils Coil 588 608 - -
Sto13g0624 752 MobiDBLite consensus disorder prediction 1 42 - -
Sto13g0624 752 ProSiteProfiles Zinc finger RING-type profile. 238 284 IPR001841 -
Sto13g0624 752 MobiDBLite consensus disorder prediction 58 189 - -
Sto13g0624 752 MobiDBLite consensus disorder prediction 684 704 - -
Sto13g0624 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 299 IPR013083 -
Sto13g0624 752 PANTHER RING FINGER 10 FAMILY MEMBER 95 748 IPR039739 -
Sto13g0624 752 MobiDBLite consensus disorder prediction 718 752 - -
Sto13g0624 752 SUPERFAMILY RING/U-box 237 290 - -
Sto13g0624 752 CDD RING-HC_RNF10 238 285 - -
Sto13g0624 752 MobiDBLite consensus disorder prediction 58 158 - -
Sto13g0624 752 Pfam Zinc finger, C3HC4 type (RING finger) 238 284 IPR018957 GO:0046872
Sto13g0624 752 SMART ring_2 238 284 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0624 68 702 C3H Transcription Factor Family AT3G26730 53.343 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0624 - - adu:107494651 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0624 13 5752480 5764696 Sto13g0624 13 5752480 5764696 ECH