Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0613 ATGCTACCAAGAAGCGCTCATGGCGTCCCTTGGATGGCGGAAGAAGTTGAAGACGCAGCATCATGGACCAGAACTAATAACGAAGGTGAGTCCAAAGATGACGATGTCATTATTACcatgggaggaggaggaggctcTCTAACCTCCTTCAAATCCATGCTTGAAGGTGAATGGTTCATGAATTCTACTATGAATTCTTCCcaccaccacacccaccacctTCATCAGGACCTTTCTAGTCTCCCAATCTCGAATCACCAAGACGCCGCCACCAGAGATAATATTGCCTTTTGTCCATCGAATCCACCCGATAATTTCCTGTTACACCACCCCATGGATTCATCTCCATTTTTGCCGACCAAAACGTGCCTCCCTTCTCTCTACAACAACAGTAATACCATTACCAACCCCTTCGAGAATGGCTTCGATTTGGGCTCTGAATCTGCGTTTTCCCCTCTCTTGATGGGATTTTCCGGCTTGAACACTCAGCCTCCTCAGATGGGAAACCTCGAGCTGATCAGCTCGAGCTCCGATCAGTTCCCGCCGTCTCGGCTGCTCCCGGTGGCGGCGGCCGACGGTGGATTTACTCCGATGGGTTTCGAAGGATTCGATACCGGGAGTGCTCTTTTTCCCAATAAGGCAAAGGCTTTAAGGCCACTCGAAGTCTTTCCTCCACTTGGCGCGCAGCCGACTCTCTTCCAGAAGCGTGCTGCTCTTCGCCAAATCTCCGGTGGTGGGACCGATCGGCTTGGGAGTTTGGAGATCTCAGCGTCGAGATTTGAGGATTATTCAACGAGGAAGAGGAAGATAGGAGAGGTGGAGGCGGAGATGGAGATTGAGGAAGGTAGCATCGATGCTTCGGGGTTGAATTATGATTCGGATGAGCTTAATGAGAGTATGCTGAATAATAAGGCGGAGGAAAATGGGAATAATAATGATGGAGGAAGTAATTCCAATGCAAATAGTACCATCacaggtggtggtggtggagacCAGAAGGGGAAGAAAAAGGGACTACCAGCGAAGAATCTCATGGCTGAGAGAAGGCGCAGGAAGAAACTGAATGATAGGTTGTACATGCTTCGCTCCGTTGTGCCCAAGATTAGCAAGATGGACAGGGCTTCCATACTTGGGGATGCAATTGACTACCTGAAGGAGTTACTACAGAGGATCAACGATCTTCACAATGAGCTGGAGACAACTCCACCTGGTTCACTTCCACCACCTTCTGCAAACATTCATCCTCTCACACCCACTCTGCCTGCACTTCCCTGCAGGGTCAAGGAAGAGCTATGCCCTAGCTCTATGCCAAGCCCTAAGAACCAACCTGCAAGGGTGGAGGTTAGGCTAAGGGAAGGGAGAGCTGTGAACATCCATATGTTCTGTGCTCGGCGACCAGGTCTTTTGCTTTCTGCCATGAGGGCCTTGGACAACCTTGGATTGGACGTTCAGCAGGCTCAATGCAGAGAAGGCCAGGATGTGCCCCCTGAGCAAATTAAAGCAGTGCTGTTGGATACAGCGGGATGCCATGGCATGATGTTCAGGAATTAG 1551 0.4784 MLPRSAHGVPWMAEEVEDAASWTRTNNEGESKDDDVIITMGGGGGSLTSFKSMLEGEWFMNSTMNSSHHHTHHLHQDLSSLPISNHQDAATRDNIAFCPSNPPDNFLLHHPMDSSPFLPTKTCLPSLYNNSNTITNPFENGFDLGSESAFSPLLMGFSGLNTQPPQMGNLELISSSSDQFPPSRLLPVAAADGGFTPMGFEGFDTGSALFPNKAKALRPLEVFPPLGAQPTLFQKRAALRQISGGGTDRLGSLEISASRFEDYSTRKRKIGEVEAEMEIEEGSIDASGLNYDSDELNESMLNNKAEENGNNNDGGSNSNANSTITGGGGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELETTPPGSLPPPSANIHPLTPTLPALPCRVKEELCPSSMPSPKNQPARVEVRLREGRAVNIHMFCARRPGLLLSAMRALDNLGLDVQQAQCREGQDVPPEQIKAVLLDTAGCHGMMFRN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0613 516 CDD bHLH_AtAMS_like 341 408 - -
Sto13g0613 516 Pfam Helix-loop-helix DNA-binding domain 345 387 IPR011598 GO:0046983
Sto13g0613 516 MobiDBLite consensus disorder prediction 304 328 - -
Sto13g0613 516 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 95 513 - -
Sto13g0613 516 MobiDBLite consensus disorder prediction 304 342 - -
Sto13g0613 516 Gene3D - 332 401 IPR036638 GO:0046983
Sto13g0613 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Sto13g0613 516 SMART finulus 344 393 IPR011598 GO:0046983
Sto13g0613 516 MobiDBLite consensus disorder prediction 18 37 - -
Sto13g0613 516 PANTHER BHLH TRANSCRIPTIONAL FACTOR 95 513 - -
Sto13g0613 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 407 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0613 Sto-Chr13 5663584 5667018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0613 21 486 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.000 8.81e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g0613 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0613 - - qsu:111985220 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0613 13 5663584 5667018 Sto13g0613 13 5663584 5667018 ECH
Sto8g1630 8 10469188 10485543 Sto13g0613 13 5663584 5667018 ECH