Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0590 ATGATGATGGATCAGCCAGAGAAATTGCTTCGCAAAACCGAGGCCTGTGCCTTGGTGGCAGGTGTTGAGGCTGAGCTTGGGCTTGTCAACGTGCCAGGAGACAACCAAATAACTCGCGGGTCGGGTCGTCGGATCCGTGACTTTTCGGGGCTTGTCGCTGCCGTTACCACTACTTTCGGGACCGTTCAGAGGAAGAAAAGGATGGCGAGGCAGAGAAGATCCTCCACTGTGAGGTTGAGATTCCTTTTTCAAAAGGAGCTAAAGAACAGCGACGTAAGCTCCCTCCGAAGAATGGTTCTCCCAAAGAAAGCAGCAGAAGCTTTCCTTCCTGCACTCGAGTCAAAGGAAGGAATTTTTATCAGCATGGACGATATGGATGGTATTCATGTCTGGACCTTCAAGTACAGcgctgattttttttttttcttttttacaggGGAATTTGTTAGCACACATGGCTTACGTCTTGGAGACTCCATCGTGGTTTACCAAAACAACCAAAACCTCAATTATgTGATTCAGGCCAAAAAGGCTTCTGAACAAGACGATTTTATGGGCGTAGCGAGCTCCGATACCCTCGGCGATATCATTCTACATGACTACGAGGTTACCAAATCCAATAGCCTGAGCGTGATGACAATTCCTACAATGAATGACACAGACATGTCGTTCATTTATGAAACGACCTTCTCAACAAATGACTCGCCACTTGATTTTTTGGGTGGATCAATGACCACTTATTCGAGGATTGGACCAGTTGAAACCTTTGGCTCTGTCGAGAATTTGTCGCTCGACGACTTCTATTAA 807 0.4523 MMMDQPEKLLRKTEACALVAGVEAELGLVNVPGDNQITRGSGRRIRDFSGLVAAVTTTFGTVQRKKRMARQRRSSTVRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPALESKEGIFISMDDMDGIHVWTFKYSADFFFFFFTGEFVSTHGLRLGDSIVVYQNNQNLNYVIQAKKASEQDDFMGVASSDTLGDIILHDYEVTKSNSLSVMTIPTMNDTDMSFIYETTFSTNDSPLDFLGGSMTTYSRIGPVETFGSVENLSLDDFY 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0590 268 SUPERFAMILY DNA-binding pseudobarrel domain 81 173 IPR015300 -
Sto13g0590 268 CDD B3_DNA 81 177 IPR003340 GO:0003677
Sto13g0590 268 Pfam B3 DNA binding domain 83 175 IPR003340 GO:0003677
Sto13g0590 268 Gene3D - 79 189 IPR015300 -
Sto13g0590 268 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 66 268 - -
Sto13g0590 268 SMART B3_2 83 179 IPR003340 GO:0003677
Sto13g0590 268 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 268 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0590 Sto-Chr13 5420781 5423350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0590 12 268 B3 DNA Binding Superfamily AT3G26790 42.368 3.98e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto13g0590 B3 8.6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0590 - - gmx:100783961 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0590 13 5420781 5423350 Sto13g0590 13 5420781 5423350 ECH