Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0547 ATGGAGAACTTCCCAAGCTTTGTTCTTAATGGAGGCGTTAAAGTGCCTATTGGGTACAGATTCTGTCCCACGGATGAAGAACTTGTGGTTCACTACCTCAGGAAGAAGGTATTTTCTCAGCCATTGCCTGCTTCAGTCATTCCTGAGTTCGATGTGTTTCAGACACACCCTCGGGGGCTTCCAGGTGTAGTAGGGATGGGTGATTCCAGAGAAAAAGGGTATTTTTTCTGCAATAGGAAGAAGGAGAATCTCCATGGAAAGGTTATTGTCAAGATACCAGGTGGTTCAGGGTACTGGAAACCCACAGGCAAAGACAAACTAATTGTGACATCTCGAACCAACCATGTGGTCGGGACGAGGAAGACTCTGGTCTTTTGTGAACCCAAACGTTCCTCCTGTGAGCCCAAAACTAGGTGGGTCATGCATCAATTGCGCCTTGTGGTTCACCCATTTCAGATGCCATTGGCAGATTGGGCTGTGTATCGCATatttttgaagaagaaaaagctGAAGGGAAAAGggtctaataataataataatattacacAGCTTTTCAAGAGCAGGAAGGTTCACAATAGACTAGAGGAGATTGAACCCAATTTCATAGATTTCACTACTGAGGAACATGGTGGGTGTGATCATGAaggtcctcctcctcctccttctccatGTTTCAGTGAAGGAAGTGACATATTTGTATCTAACAAGTTAGATTAG 717 0.4059 MENFPSFVLNGGVKVPIGYRFCPTDEELVVHYLRKKVFSQPLPASVIPEFDVFQTHPRGLPGVVGMGDSREKGYFFCNRKKENLHGKVIVKIPGGSGYWKPTGKDKLIVTSRTNHVVGTRKTLVFCEPKRSSCEPKTRWVMHQLRLVVHPFQMPLADWAVYRIFLKKKKLKGKGSNNNNNITQLFKSRKVHNRLEEIEPNFIDFTTEEHGGCDHEGPPPPPSPCFSEGSDIFVSNKLD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0547 238 Gene3D NAC domain 24 171 IPR036093 GO:0003677|GO:0006355
Sto13g0547 238 MobiDBLite consensus disorder prediction 208 238 - -
Sto13g0547 238 PANTHER NAC TRANSCRIPTION FACTOR 56 1 227 - -
Sto13g0547 238 PANTHER NAC DOMAIN CONTAINING PROTEIN 84 1 227 - -
Sto13g0547 238 SUPERFAMILY NAC domain 11 166 IPR036093 GO:0003677|GO:0006355
Sto13g0547 238 Pfam No apical meristem (NAM) protein 16 146 IPR003441 GO:0003677|GO:0006355
Sto13g0547 238 ProSiteProfiles NAC domain profile. 15 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0547 Sto-Chr13 4877174 4878598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0547 1 168 NAC Transcription Factor Family AT5G13180 47.059 6.04e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto13g0547 NAM 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0547 - - lang:109340127 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0547 13 4877174 4878598 Sto13g0547 13 4877174 4878598 ECH
Sto3g2088 3 17527734 17528853 Sto13g0547 13 4877174 4878598 ECH