Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0500 ATGGAGTACTGTGGGTGGGATCCAGTGAGGTCGGGAGTACCCAAGAATGGATCGAGAAGGAAATTAAAGCATCGCAATTGGGTAGATTTGAGAGTATTATCAGAGAGTAGCAATAATACGGCACAGAAGAAGAAATCATCAGAATTAATAACGTCGGCGAGAAGGAACGAGAAAAGGGCAGCGCAGAAGGCGAAGTGCTTGGTGGATAATTGCGAGTACGACATCAATAAATGCAGAGACTACCACAGGCGCCACCGCGTGTGTGAGACGCACTCTAAAACCGCTGTGGTGAGAGTCAAGGGGAAGCCCCAGAGGTTCTGCCAGCAATGCAGCAGatTTCACTCGCTGGATGAGTTTGATGAGTATAAAAGGAGTTGTCGGAGGCGTCTTGACGGTCATAACAGACGAAGAAGAAAGCCTCACCGTCCTCCTCCTCTCTACTTCGCTTCTGATTATGCAGgaCCCAGACTCCTCCAATTTGGtactcctcctcctcctgcATTTCCAGATGTATATGGCAACTTGATTCATCCATATCTGAGTATGTGGCCTGCGACACCAGCACAACACACAACCTTCAATCGCTTCACCCCAATTTTGCCCAAAATTGACCCACAAACTCCTCAATTACCTTCCTTTAATAATGCTACCATAATGCATCCaaatattaacaataataataataataataataataatgccaCTGAATTAGGAGTCACATCGGGATTTGGAATTGGCAATATCAATACAAAGAtaatgcatcatcatcatcttccggATTGTGCTCTCTATCTTCTGTCATTTGAGGATCAAAATGGATGGGAATATAAGGACTATGCTAATGTTGGAATAAATGGTAATAATAATAGAGGAGGTGGTGGTGGCAAGTGTTTATGTTCTGCAAGTGCAATAATAGATGATAATGTAGTGATGAACATGAACAACATTACTACTAGTGCCAATAATAACAACCTTCATGATGATGATTACAATGAGATGCCCCATATGGGTATGGATATTAGTTATGGGTTAATGGAAGATGGTGGGGCTTCTTTCACTTTTCCTTATGCCTTGGAATAG 1080 0.4 MEYCGWDPVRSGVPKNGSRRKLKHRNWVDLRVLSESSNNTAQKKKSSELITSARRNEKRAAQKAKCLVDNCEYDINKCRDYHRRHRVCETHSKTAVVRVKGKPQRFCQQCSRFHSLDEFDEYKRSCRRRLDGHNRRRRKPHRPPPLYFASDYAGPRLLQFGTPPPPAFPDVYGNLIHPYLSMWPATPAQHTTFNRFTPILPKIDPQTPQLPSFNNATIMHPNINNNNNNNNNNATELGVTSGFGIGNINTKIMHHHHLPDCALYLLSFEDQNGWEYKDYANVGINGNNNRGGGGGKCLCSASAIIDDNVVMNMNNITTSANNNNLHDDDYNEMPHMGMDISYGLMEDGGASFTFPYALE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0500 359 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
Sto13g0500 359 Pfam SBP domain 66 139 IPR004333 GO:0003677
Sto13g0500 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 270 IPR044817 GO:0003677
Sto13g0500 359 SUPERFAMILY SBT domain 65 142 IPR036893 GO:0003677|GO:0005634
Sto13g0500 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED 42 270 - -
Sto13g0500 359 Gene3D - 57 127 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0500 Sto-Chr13 4402404 4406159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0500 62 160 SBP-box Gene Family AT5G50670 60.784 1.27e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto13g0500 SBP 5.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0500 - - gmx:100798317 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0500 13 4402404 4406159 Sto13g0500 13 4402404 4406159 ECH