Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0354 ATGGCTTATgtttcactttcttttcttctttttgctcTTTCTGTTTTGGTTTCTTCCTCCTCTGCAATTCAAGACCCTGAGCTAGTTGTACAAGATGTACAcagGAGCATCAACGCTTCAAGGAGAAACTTGGGCTTCTCATCCTGCGGAACCGGCAACCCCATCGACGACTGCTGGCGGTGCGACCCAAACTGGGAACGCAACCGCCACCGGCTCGCCGACTGCGCCATCGGGTTCGGCAAGGATGCCCTCGGCGGGCGGAACGGCCGCATCTACGTCGTCACCGACTCGGGCGACGACGACCCAGTAAACCCCAGACCCGGAACCCTAAGGCACGCCGTCATACAGGACGAGCCATTATGGATCATCTTCAAGCGAGACATGGTCATCAACCTCAAGCAAGAGCTCGTCATGAACTCCTTCAAGACCGTCGACGGCCGCGGGGCCAGCGTCCACGTGGCCGGCGGCGGGTGCTTCACCATCCACTACGTGACCAACATCATCATCCACGGCATCCACATACACGACTGCAAGCCCACGGGCCGCGGCGACATCCGGGACTCGCCGCGGCACTACGGGTGGTGGAGGGTGTCGGACGGCGACGGGATCTCGATATTCGACTCGAAGCACGTGTGGGTTGACCACTGCTCGCTGTCGAATTGCCATGATGGGCTCATCGATGCCATACATGGGTCCACGGGTATAACCATATCGAATAACTATATGACCCATCACGATAAGGTCATGCTCTTGGGACATAGTGATTCTTATACGAGGGATAAGGACATGCAGGTCACTATTGCGTTTAACCATTTTGGGGAGGGTCTTGTCCAGAGAATGCCAAGGTGTAGGCATGGATATTTCCACGTGGTGAACAACGACTACACGCACTGGGAAATGTACGCCATTGGTGGGAGTGCCGATCCTACTATCTACAGCCAAGGGAACCGGTTTCTCGCACCGGATAACCGGTTCAGCAAGGAAGTCACCAAGCACGAGGACGCCGGGGAGAGCGAATGGATGAACTGGAACTGGCGGTCAGAAGGTGACATGTTCCTCAACGGAGCATTCTTCAGGCAATCCGGTGCAGGCGCTTCCTCTAGCTATGCCAGGGCCTCGAGCCTCAGCGCCAGACCCTCGTCTCTCGTCGGCTCCATCACCACCACCGCCGGCGCACTCAACTGCCGCAAAGGCACCCGATGCTGA 1206 0.5589 MAYVSLSFLLFALSVLVSSSSAIQDPELVVQDVHRSINASRRNLGFSSCGTGNPIDDCWRCDPNWERNRHRLADCAIGFGKDALGGRNGRIYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIIFKRDMVINLKQELVMNSFKTVDGRGASVHVAGGGCFTIHYVTNIIIHGIHIHDCKPTGRGDIRDSPRHYGWWRVSDGDGISIFDSKHVWVDHCSLSNCHDGLIDAIHGSTGITISNNYMTHHDKVMLLGHSDSYTRDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTIYSQGNRFLAPDNRFSKEVTKHEDAGESEWMNWNWRSEGDMFLNGAFFRQSGAGASSSYARASSLSARPSSLVGSITTTAGALNCRKGTRC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0354 401 Pfam Pectate lyase 133 318 IPR002022 -
Sto13g0354 401 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Sto13g0354 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Sto13g0354 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Sto13g0354 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Sto13g0354 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Sto13g0354 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Sto13g0354 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Sto13g0354 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Sto13g0354 401 SUPERFAMILY Pectin lyase-like 37 396 IPR011050 -
Sto13g0354 401 PANTHER PECTATE LYASE 18-RELATED 17 398 IPR045032 GO:0030570
Sto13g0354 401 Gene3D - 52 394 IPR012334 -
Sto13g0354 401 PANTHER OS04G0137100 PROTEIN 17 398 - -
Sto13g0354 401 SMART amb_all 127 324 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0354 Sto-Chr13 3118149 3121319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0354 2 401 Polysaccharide Lyase AT5G63180 74.877 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0354 K01728 - zju:107415231 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0354 13 3118149 3121319 Sto13g0354 13 3118149 3121319 ECH
Sto8g1767 8 11257545 11262160 Sto13g0354 13 3118149 3121319 ECH