Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0289 ATGGCTTCACGGTTTGACAGTATCAGGGGTATCCATGCATTGAGCTTCGAATGGACGATTAAAGTTCGCGTTCTCCGTATTTGGAAGGCTCCTCCTTATCCGAAGAATTCACCCCATCCGTCTTTGGAGATGGTTTTATGTGATCGTGAGGGGTCGAAGATCTGTGCACACGTGAAGAGTCCATTTGCTGTCAAATTAATGAATGTGCTGAAAGAAGGCTCGGTGTATGTAATGTCGCAATTCAATGTCGAATCTAATTCTGGTGGTTTCCGTGCTGCAAAACATGGCTTTAAGTTGAACTTCCAATTCCAAGCACGCATAGCCGAAACTGATGATGACGAGTCAATTGAACGTTATGGCTTTGAGTTTCTAACTGCATCAAGAATTTTTGCGCCAGATTTTGATCATGACATCTTAGTTGATGTAATTGGCCGGCTTATCCATATGGGTGATATTCAACAAGCTTTTTCTGATCCTAAGACTAAACGTGTCAACATTCAACTTGAGGATCAAATGAAAGCAAAACTCAACATTACACTTTGGGGTCCTTTCGTTGACCAAATTGTTGAGTATGCTCACAGTCACTCCAATGGTGTTGTAGTCATTGTAATCCAATATTGCAAAATTAAAGAATACGGTGGCCATAAGACACTATCAAACTCAATGTTTGCATCACGAATGTTTGTTAACGCAGACATTCCTGAGATAACTGAGTTTATAAGCGGATTACATCCTGACGAGTTATCAAGCCCTATTAATCAAAGTCTTCTTAACTCTGCTGTTCCTCCAAGTCCTCTTGAATCTGCATTTTCTGATTGGTCATTGTCAAGTATTCAAGACTTTTATCATGCTGCTGATTCGACTGTATATGTAATTCTTGCATCTGTCCTCAAGGTGAATGTTGAGCGAGGTTGGTACTACGACTCATGCAAAAAATGTAAGTGTAAGCTTGAGCCTGATTTTTACTGCACCAAATGCGATTGTCTGGTTCATGCTTCAACATGCAGGTATAAGGTTGAGCTTCTTATCTTAGATGACTCAGGAACTGCTAATGTTACAGTGTTTGATAAGGATGTTGAGGCTTTTCTGGGCATTTCTGTTATTGACCTTAGGAAGGAACATTTACAGAACGTCAACGATATTCGTCAGATGCCGGAAAGGTTTGATAGATTCATAGGACAAATGTTTGTCCTCAAGGTATCCGTTAAAACATCCAATTGGAACAATTCTTATTCGTTCACTGTACAGAAAATGACTTCCGATCATGATTTGATTGAAAAGTTCAAAAGAATGGCAAAGGCAAAgATTGATCTAGCTGCTGTTGATGATGCTCTGTCAACACCTGTGCAGCAGAAGACTACTACTCATAGTGTATTGGATGCGCGCATGCTTTCTTTTGCTGACAATGATACTGGTCCATCTTGCTCTAATAGTCTCAATGCAAAGCGTCCAAATGATGATGGTGCGTCTGCCCAGTTTGGTCCTGATGAGCATAGCACAATTGGAGAAGGCGCTAAAAAGAAGATGAAGGATGCTATTGTCTAA 1545 0.4045 MASRFDSIRGIHALSFEWTIKVRVLRIWKAPPYPKNSPHPSLEMVLCDREGSKICAHVKSPFAVKLMNVLKEGSVYVMSQFNVESNSGGFRAAKHGFKLNFQFQARIAETDDDESIERYGFEFLTASRIFAPDFDHDILVDVIGRLIHMGDIQQAFSDPKTKRVNIQLEDQMKAKLNITLWGPFVDQIVEYAHSHSNGVVVIVIQYCKIKEYGGHKTLSNSMFASRMFVNADIPEITEFISGLHPDELSSPINQSLLNSAVPPSPLESAFSDWSLSSIQDFYHAADSTVYVILASVLKVNVERGWYYDSCKKCKCKLEPDFYCTKCDCLVHASTCRYKVELLILDDSGTANVTVFDKDVEAFLGISVIDLRKEHLQNVNDIRQMPERFDRFIGQMFVLKVSVKTSNWNNSYSFTVQKMTSDHDLIEKFKRMAKAKIDLAAVDDALSTPVQQKTTTHSVLDARMLSFADNDTGPSCSNSLNAKRPNDDGASAQFGPDEHSTIGEGAKKKMKDAIV 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0289 514 CDD RPA1_DBD_C 289 433 IPR013955 -
Sto13g0289 514 PANTHER REPLICATION FACTOR A 1, RFA1 38 474 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto13g0289 514 MobiDBLite consensus disorder prediction 472 514 - -
Sto13g0289 514 CDD RPA1_DBD_A_like 19 107 - -
Sto13g0289 514 Gene3D - 115 245 IPR012340 -
Sto13g0289 514 Gene3D - 274 436 IPR012340 -
Sto13g0289 514 SUPERFAMILY Nucleic acid-binding proteins 122 244 IPR012340 -
Sto13g0289 514 Pfam Domain of unknown function DUF223 43 120 IPR003871 -
Sto13g0289 514 Gene3D - 4 109 IPR012340 -
Sto13g0289 514 PANTHER BNAC07G49340D PROTEIN 38 474 - -
Sto13g0289 514 SUPERFAMILY Nucleic acid-binding proteins 5 114 IPR012340 -
Sto13g0289 514 Pfam Replication protein A OB domain 135 229 IPR031657 -
Sto13g0289 514 MobiDBLite consensus disorder prediction 500 514 - -
Sto13g0289 514 Pfam Replication factor-A C terminal domain 293 418 IPR013955 -
Sto13g0289 514 CDD RPA1_DBD_B_like 141 241 - -
Sto13g0289 514 SUPERFAMILY Nucleic acid-binding proteins 285 419 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0289 Sto-Chr13 2617339 2619810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0289 4 456 Core DNA Replication Machinery Family AT5G45400 20.363 1.50e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0289 - - soe:110779942 216.083