Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0276 atgaAGTATGTCATCGAATTTGATAAGAGGAATGTTCCTAGTTATGTGGTGGTGAACAGAGTAGAAgatcgtcatcatcatcatcatcagcctCCTCTGGATTTGCCTCCTGGCTTCCGATTCCACCCCACCGATGAGGAAATCATCACTCACTATCTCACAGAGAAGGTCTTGAATAGCGGTTTCAGTGCAACCGCCATCGGCGAGGCCGATTTGAATAAGTGCGAGCCTTGGGATTTACCGAAGAAGGCGAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCAGAGAGACCGGAAGTACCCGACGGGGATGAGGACGAACAGAGCGACGGTGTCGGGATACTGGAAAGCCACCGGAAAAGACAAAGAGATCTTCAAAGGGAAAGGGAATCTGGTAGGCATGAAGAAGACTCTCGTCTTCTACACAGGAAGAGCTCCCAAAGGCGAGAAATCCAATTGGGTTATGCACGAGTTCCGATTAGAAGGCAAATTCGCCACTCACAATCTCCCCAAACCCGCAAAGGAAGAATGGGTTGTGTCTAGAGTGTTTCACAAGAACAGTACAGACATGAAGAAGATGAGTCCGAACCCGAATCCGAATCCGAACCCAAACCCGATTATTCATCCATCAATTCAAGGCCTTGATCATGAAGATTTGTTCGACTGTTCTTCATCTCTCCCGCCTCTCATGGATGACTACGACTTCAAGGGGACGGCCAGGATCAACTCTATTACCATCCCACCCTCATCCGACGGCTACAATTATTACCTTCCCAACTTCTCCAATAATAATATTCAACAATCTCATCCCCAAATGCAATTCATCCATAATCAACCTACCAGTGTGTCGTCCACCGCGACGACGACGTCGTTTCAGCAGAATCAGTACTACTACCGCTGCAAGATGGAGCCCTTGTCGTCGTCCACCAACACCACCGGCGCCGCCGTGAGCAACGACAGGAACACCGACGCTTCCTCCGTCGTTTCGAATCACAAGGCCTTCtacggcggcggcggcgatcCTAATCCTCTCGGAGTTGGACCCCTCTCCGATTTAGAAGGCCTGTGGGATGATTACTGA 1083 0.4737 MKYVIEFDKRNVPSYVVVNRVEDRHHHHHQPPLDLPPGFRFHPTDEEIITHYLTEKVLNSGFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFKGKGNLVGMKKTLVFYTGRAPKGEKSNWVMHEFRLEGKFATHNLPKPAKEEWVVSRVFHKNSTDMKKMSPNPNPNPNPNPIIHPSIQGLDHEDLFDCSSSLPPLMDDYDFKGTARINSITIPPSSDGYNYYLPNFSNNNIQQSHPQMQFIHNQPTSVSSTATTTSFQQNQYYYRCKMEPLSSSTNTTGAAVSNDRNTDASSVVSNHKAFYGGGGDPNPLGVGPLSDLEGLWDDY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0276 360 Pfam No apical meristem (NAM) protein 36 161 IPR003441 GO:0003677|GO:0006355
Sto13g0276 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 28 319 - -
Sto13g0276 360 ProSiteProfiles NAC domain profile. 35 186 IPR003441 GO:0003677|GO:0006355
Sto13g0276 360 SUPERFAMILY NAC domain 26 187 IPR036093 GO:0003677|GO:0006355
Sto13g0276 360 Gene3D NAC domain 44 190 IPR036093 GO:0003677|GO:0006355
Sto13g0276 360 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 28 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0276 Sto-Chr13 2464422 2468159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0276 26 358 NAC Transcription Factor Family AT5G18270 52.754 1.24e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto13g0276 NAM 7.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0276 - - gmx:100813376 363.614