Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0266 ATGGATGTCTGCCGGAAAGTTTCAGTTTCCGGCGAGTGCCAGCAAGAGAGAAgacccctctccctctctccctctcttgaCGACCTCTTCTCTTCTCAGAACATGGAAGTGGATGTTGGGTTAGAGTGGCTATCAGTATTTGTAGAAGACTGTTTCTCAAGCCCACCAAGTTGTCTCTTGTCACCACCAAATGATCAGCTTCTTCAAACcacaaaaaccccaaactccaaaccctccatacaacaacaaataatgcaaaagcaaaagcaaaagcaaaatcaaaatcaatctccTCTGCACAATTTTGTGGTGCCACCAGGGAAAGCAAGGAGCAAAAGGAAGAGACTTTCAGCACCAAGAACAACAAAAGACCCATTGTTATTACCATTAAGCAGCATGTGGTCCTCACACTCACACCATTTGAATAACCCACAGATCAATGAACCTTTGATTTCAGACCCTTCTCTCCTGAAACAAGCCTATTGGTTAGCAGATAGTGAACTCATAATAGTCCCCAAAAGGGAAGAAgacaagaagcaagaagaagaagaagaagaagaagaggagaaggagaagaagggggAGATGATgttgaggaggaagaaggagaatttGGAGAGCTCAGTGTCAATTAGAAGGTGTAGCCATTGCCTTGCACAGAGGACCCCACAATGGAGGGCAGGCCCATTGGGCCCAAAGACACTGTGTAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTACTGCCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTAAGCTTCTTGCACTCCAATTCCCACAAGAAGGTCATGGAGATGAGAATGGCTATTGTGTCTTCTATTCCTAGTGAGCACTAG 864 0.3588 MDVCRKVSVSGECQQERRPLSLSPSLDDLFSSQNMEVDVGLEWLSVFVEDCFSSPPSCLLSPPNDQLLQTTKTPNSKPSIQQQIMQKQKQKQNQNQSPLHNFVVPPGKARSKRKRLSAPRTTKDPLLLPLSSMWSSHSHHLNNPQINEPLISDPSLLKQAYWLADSELIIVPKREEDKKQEEEEEEEEEKEKKGEMMLRRKKENLESSVSIRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSFLHSNSHKKVMEMRMAIVSSIPSEH 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0266 287 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 287 - -
Sto13g0266 287 MobiDBLite consensus disorder prediction 174 196 - -
Sto13g0266 287 Coils Coil 171 199 - -
Sto13g0266 287 Pfam GATA zinc finger 214 248 IPR000679 GO:0006355|GO:0043565
Sto13g0266 287 CDD ZnF_GATA 213 260 IPR000679 GO:0006355|GO:0043565
Sto13g0266 287 ProSiteProfiles GATA-type zinc finger domain profile. 212 244 IPR000679 GO:0006355|GO:0043565
Sto13g0266 287 Gene3D - 206 274 IPR013088 GO:0006355|GO:0008270
Sto13g0266 287 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 272 - -
Sto13g0266 287 MobiDBLite consensus disorder prediction 62 125 - -
Sto13g0266 287 ProSitePatterns GATA-type zinc finger domain. 214 239 IPR000679 GO:0006355|GO:0043565
Sto13g0266 287 MobiDBLite consensus disorder prediction 62 101 - -
Sto13g0266 287 SMART GATA_3 208 262 IPR000679 GO:0006355|GO:0043565
Sto13g0266 287 PANTHER GATA TRANSCRIPTION FACTOR 1 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0266 Sto-Chr13 2378658 2380001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0266 41 276 C2C2-Gata Transcription Factor Family AT4G32890 38.559 3.73e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto13g0266 GATA 7.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0266 - - gmx:100786479 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1579 8 10132925 10134021 Sto13g0266 13 2378658 2380001 CCT