Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0237 TTGCAGGATGCTCACGAGGAGTCCAAAGCTGTGACCAAAGCTCCTGCCATGAAAGATATTAAGGAGAGAATGGAAAAAGATGTTGATGAAGTTAAGAAAATTGCCCTTCACATAAAAACAAGAATTGAAGAACTGGACCAAGATAATTTGGCCAATAGGCAGAAGCGTGGGTGCGGAAAAGGAACAGGTATTGACAGGTCAAGAACAGCAACCACCATTGgcttaaaaaagaaattgaaggaaAAAATGGCTGAGTTTCAGAGCCTACGGGAAGCCATACAGCTAGAATATCGTGAGGTCGTAGAGAGGCGTGTTTTTACAGGTTTTGGCTTATTTAACAATGTACAGACAATTGACAGATTAATTGAGACTGGAGATAGTGAACAAATTTTCCAGAAGGCAATAAAGGAACAAGGACGAGGCCAGATACTAGACACTCTGGCAGAGATTCATGAACGACACGAAGCAGCTAAAGATGTTGAAAGGAAGCTTCTTGAATTACATCAGATATACCTCGATTTGGCTGTGTTAGTCGATGCACAGGGCGACATTCTTAACAACATAGAATCCCAGGTATCAAGTGCTGTAGATCATGTGCAACAAGGCAATATTGCCCTTCAGAAGGCCAAGAACAAACAAAAGAGTTCAAGAAAATGGATGTGTATTGCAATAATTATACTTCTCATTGTCATTGCCATTGTCCTTGTTAATGTCCTTAAACCATGGAGTAACAAAAGAGGGGCATAG 747 0.3989 LQDAHEESKAVTKAPAMKDIKERMEKDVDEVKKIALHIKTRIEELDQDNLANRQKRGCGKGTGIDRSRTATTIGLKKKLKEKMAEFQSLREAIQLEYREVVERRVFTGFGLFNNVQTIDRLIETGDSEQIFQKAIKEQGRGQILDTLAEIHERHEAAKDVERKLLELHQIYLDLAVLVDAQGDILNNIESQVSSAVDHVQQGNIALQKAKNKQKSSRKWMCIAIIILLIVIAIVLVNVLKPWSNKRGA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0237 248 CDD SNARE_syntaxin1-like 146 208 - -
Sto13g0237 248 Gene3D - 1 105 - -
Sto13g0237 248 Gene3D - 141 240 - -
Sto13g0237 248 PANTHER SYNTAXIN 1 239 IPR045242 -
Sto13g0237 248 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 147 209 IPR000727 -
Sto13g0237 248 PANTHER - 1 239 - -
Sto13g0237 248 SMART tSNARE_6 142 209 IPR000727 -
Sto13g0237 248 Coils Coil 76 96 - -
Sto13g0237 248 SUPERFAMILY t-snare proteins 10 202 IPR010989 GO:0016020|GO:0016192
Sto13g0237 248 Pfam Syntaxin 1 182 IPR006011 GO:0016020
Sto13g0237 248 SMART SynN_4 1 98 IPR006011 GO:0016020
Sto13g0237 248 Pfam SNARE domain 184 235 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0237 Sto-Chr13 2138784 2142530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0237 1 248 SNARE and Associated Proteins AT3G03800 70.565 7.39e-120 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0237 K08486 - gmx:100306329 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0237 13 2138784 2142530 Sto13g0237 13 2138784 2142530 ECH