Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0197 atggaagaagatgatgataagaGGGAGGAGGGAGATAGTGGTGAAGAAGGTGGAAGAGCAATAATAAGACCAAGGCTGAGATGGAATCCAAAAGCAGAGCAAATCCAAATTCTAGAGTCCATCTTCAACGGTGGGATGGTGAATCCTCCGAAGCATGAGACCATCCGAATCACTCAGCTTCTTCAGAGTTTCGGCGCTGTCTCTGACGCCAACGTCTTCTACTGGTTCCAGAATCGCCGCCGCCAATGCCAGATTGCCCaggcccaagcccaagcccaggcCCAGGCCCATCTGGCTGGTCATCATGATCATCGTCAACCATCTGAGTCTGCAGCTATGGTGATGGGGGTTGATGCTTCTGCTTATCATATTCATGCTCATCATTATCATGATGATGCTTATTATGATTTCAACTATCAACTTCCTGGAAACATCACAGTGTTTATCAATGGTGTTGCAAGAGAAGTCCGAAATGGACCAATGCACATGAAATCAATGTTTGGTGAAGATGTGATGTTACTTAATTCCTCAGGTCTACCACTTCACACCAATGATTTTGGCTTCTTGATCCAGGGTTTGCACCATGGTGAAACCTACTTTCTGGTAATTAATTAG 615 0.4195 MEEDDDKREEGDSGEEGGRAIIRPRLRWNPKAEQIQILESIFNGGMVNPPKHETIRITQLLQSFGAVSDANVFYWFQNRRRQCQIAQAQAQAQAQAHLAGHHDHRQPSESAAMVMGVDASAYHIHAHHYHDDAYYDFNYQLPGNITVFINGVAREVRNGPMHMKSMFGEDVMLLNSSGLPLHTNDFGFLIQGLHHGETYFLVIN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0197 204 SMART HOX_1 23 90 IPR001356 GO:0003677
Sto13g0197 204 CDD homeodomain 24 83 IPR001356 GO:0003677
Sto13g0197 204 Pfam Homeodomain 25 81 IPR001356 GO:0003677
Sto13g0197 204 SUPERFAMILY Homeodomain-like 24 83 IPR009057 -
Sto13g0197 204 Gene3D - 22 84 - -
Sto13g0197 204 MobiDBLite consensus disorder prediction 1 23 - -
Sto13g0197 204 ProSiteProfiles 'Homeobox' domain profile. 21 86 IPR001356 GO:0003677
Sto13g0197 204 PANTHER WUSCHEL-RELATED HOMEOBOX 11 128 203 - -
Sto13g0197 204 PANTHER WUSCHEL-RELATED HOMEOBOX 11 5 113 - -
Sto13g0197 204 PANTHER WUSCHEL-RELATED HOMEOBOX 11 5 113 IPR044558 GO:0003700|GO:0048830
Sto13g0197 204 PANTHER WUSCHEL-RELATED HOMEOBOX 11 128 203 IPR044558 GO:0003700|GO:0048830
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0197 Sto-Chr13 1682083 1684270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0197 13 203 Wox Gene Family AT3G03660 38.306 3.88e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Sto13g0197 Homeodomain 5.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0197 - - aprc:113866574 148.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0197 13 1682083 1684270 Sto13g0197 13 1682083 1684270 ECH