Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0192 ATGGGAAGCAGAAAGGAAGATGAGAGGAACGAGAAGATTATTAGGGGTCTTATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGCAATAGTCTGGGTCCACAATATGTTTGCACAAATTTTTGGACGTTCGTTTGCATGACATGCAGTGGGATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTATCAATGGCGAAGTTCACTTCTCAAGAAGTAGAAGCTCTTCAAAATGGTGGAAACCAGCGGGCAAGGGACATATATTTAAAAGATTGGGACTTCCAAAGACAGCGGTTGCCAGATAGCAGGTGCAATATATGTCcaaaaaattatcataaaattgaCAAGTATACATGTGAATATGTAGATCTCGAGCAAACTAATTTTGTCTTAGACATGGCTCCTGGAGCCATGGCGCATTGCGCACTGCGTTGCGCCCGCCATAGCCCTAGAATACATGGAGATGAGACAAGGCGTGCCAGTTCTTATCACTCATTTTCTCAAAGTCCTCCATATGATTATCAATATGAAGATCGACGATATGGAAAACAAGCAGGTGCATTGACCAGGAAGCCTGGTTCAGATAAAGGCCGCTATGAAGGAAACATGGCTAGTATTATTTATAGTCCTGGTCGCTTCAGCGATCATGCATCTGAGGACAGGTTTGCAAATGAGGGTTCTGGTCCGAGAATTTCAGACTATTCTGTGACTAGTGGAGGTGAACAATTCAAATCCGGTGTGCAGTCTCCCAAGTTTCATAACATTGGAGTTAGCAGTCCATTCCATCAGCGTTCTAGTGCTGGTTCAAGTGAAGATGTATGGTCTCAATCAAGGTATATGTCTTTAGAAGCAATTGCCAAGGGAGAAGCAGATGGACGTCATCCACagACATCTTTTGGAACTACATTGGGATCAACAGCCAGCAATTCAGTGCCCTTTAGATCTTACAGTTCTGGTGGTTTAGTTGATCTTTTTTCAGAACCCATGCAAGCTTCTGGACCACATCAGGATAAAGTGTGTGCCATACCACAACAATCTCATCCGCCAAGATCTGTAAGCTTGGATCTTTCGAAGGCACTAGTGGCATCCGAGCCATTCTCTTCCTCAGTGCAATCTATTGATCTTTTTGCATTGCCAGCATCCTCTCAGGCTCCATCAGTGGATTTGTTTCAAGCATCTGTTTCGTCAGCTCCATCTTTGAATGACAATCAATCTTCACAAACATCGCAGCCCTCATCTATTGACTTATTTGTGCATGTTCCTCAGCAGCAGTTGGCTGTTACCTCAGATGAGAAGTCACCAGAGTTATTTCTCCCTAAAAATGAAGGATGGGCAACATTTGACATGCCTCAGCAAACAGCACCTACTGCACAACCTGAAACTCCAGCCGGAGTACCTTCAACTGATAAATCTTTGCTGGAAATATTTGATCCATTTTCTACTGCAAATGTCAGCTTGCAATGGCCATCTTTTGAACCTTCTGTTGTTCATGAGCCTTCAACTACACCCAATCCATGGCATGGTGGTGTGCCAAATGGAGAGCAAATAATGGATTTAGACAAACCATGGAATGCATTTGAAGATTCTGGTTCCCACCTTCCTATAGATGCTGGCTTCATCGAAGAGACTCAACCGAATAAAACCAATCAGAAATCAACTAATCCATTTGATCTTCCCTATGAATCTGATGTACAGCAAGACAATATGGTATGTCATTGGTTGTTGACATTTGTGTTAATTggattTTCAATTCTTGCTGCTCTCATTTTGCCCTCTAGAATCTACTACCTAGCTTTCCCTTTTTTGTATACTGAAGAACAAAATAGACTTGAACCAGATAATGAGGTAATCATGTTCTTCAGCTTCCTATATCTAACATGTCCTCTCTATCCATTGCAGTTCCTTGATATCAGCTCTTTGCAAGCTGCTCTACCAGATGCCCAGTTGGCACCCCCATTCCATGGTGGTATAGCGGAACCATGGCTCCCTCAAAGCATGGCCCCTTATATTTCATCTACCGGACAAGGCAAAAAGTTAAGTTTGGAGAAGATGCATCCTTACAAGACGATGAGGATGAGCCTAGTGAGTCAGGTAGGAAGAAGAATACGTGAGGCATTTCCAGATGATGATTAA 2133 0.4257 MGSRKEDERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMAKFTSQEVEALQNGGNQRARDIYLKDWDFQRQRLPDSRCNICPKNYHKIDKYTCEYVDLEQTNFVLDMAPGAMAHCALRCARHSPRIHGDETRRASSYHSFSQSPPYDYQYEDRRYGKQAGALTRKPGSDKGRYEGNMASIIYSPGRFSDHASEDRFANEGSGPRISDYSVTSGGEQFKSGVQSPKFHNIGVSSPFHQRSSAGSSEDVWSQSRYMSLEAIAKGEADGRHPQTSFGTTLGSTASNSVPFRSYSSGGLVDLFSEPMQASGPHQDKVCAIPQQSHPPRSVSLDLSKALVASEPFSSSVQSIDLFALPASSQAPSVDLFQASVSSAPSLNDNQSSQTSQPSSIDLFVHVPQQQLAVTSDEKSPELFLPKNEGWATFDMPQQTAPTAQPETPAGVPSTDKSLLEIFDPFSTANVSLQWPSFEPSVVHEPSTTPNPWHGGVPNGEQIMDLDKPWNAFEDSGSHLPIDAGFIEETQPNKTNQKSTNPFDLPYESDVQQDNMVCHWLLTFVLIGFSILAALILPSRIYYLAFPFLYTEEQNRLEPDNEVIMFFSFLYLTCPLYPLQFLDISSLQAALPDAQLAPPFHGGIAEPWLPQSMAPYISSTGQGKKLSLEKMHPYKTMRMSLVSQVGRRIREAFPDDD 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0192 710 SUPERFAMILY ArfGap/RecO-like zinc finger 9 118 IPR037278 -
Sto13g0192 710 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 88 IPR001164 GO:0005096
Sto13g0192 710 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 634 680 - -
Sto13g0192 710 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 546 573 - -
Sto13g0192 710 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 533 - -
Sto13g0192 710 CDD ArfGap_AGFG 11 103 - -
Sto13g0192 710 Gene3D Arf GTPase activating protein 2 128 IPR038508 -
Sto13g0192 710 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Sto13g0192 710 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Sto13g0192 710 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Sto13g0192 710 SMART arf_gap_3 11 134 IPR001164 GO:0005096
Sto13g0192 710 Pfam Putative GTPase activating protein for Arf 12 102 IPR001164 GO:0005096
Sto13g0192 710 PANTHER ARFGAP/RECO-RELATED 546 573 IPR044820 GO:0005096
Sto13g0192 710 PANTHER ARFGAP/RECO-RELATED 634 680 IPR044820 GO:0005096
Sto13g0192 710 PANTHER ARFGAP/RECO-RELATED 1 533 IPR044820 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0192 Sto-Chr13 1616448 1624384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0192 14 88 C2H2 Transcription Factor Family AT4G05330 36.709 3.89e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0192 K15044 - gmx:100788316 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0192 13 1616448 1624384 Sto13g0192 13 1616448 1624384 ECH