Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0174 ATGGGGAGGAAGCGAAAGCTCACGCCAATATCTTCCGAATCCGTTGAACCCCCATTGAagcagcaacaacaacaacaactgCAAGTGCAGCCAATGGTTGAAGACCAAGACAATGATAACGATAATCCCGATCACGCCCGAAGTGCCAATAATCAGGCTTCGAAGGCTCAGTCAACCTCAACGGCGGCAACATCAGTGACGACACAATACAGAAAGgatgacgacgacgacgagCCCATACTGAAGCTTTTGGAACCGTTCAGCAAGGAACAGATTTTAAATCTGCTGTGCGAAGCAGCGAATAAACATCGCGATGTAGCGGATCGGATCCGAAAGGTAGCTGATGAGGATCCCGCTCATCGGAAAATATTCGTACACGGCCTCGGATGGGACACAACAGCGGATACGCTGATCAACGTTTTCAAGCAGTATGGTGAAATTGAAGATTGCAAAGCTGTGTCTGATAAGTTATCTGGGAAATCCAAGGGCTATGGTTTCATCCTCTTCAAGTCGCGGCGTGGAGCTCGAAATGCGTTAAAGCAACCGCAGAAGAAGATCGGGAACCGGATGACGGCCTGCCAGCTGGCTTCGATTGGTCCGGTTCAACAGTCAAACGCCGTACAAACAACACCTGCAGCACCACAGCCACAGGTATCAGAGTACACCCAAAGGAAAATTTACGTTAGCAATGTTGGGGCCGAACTCGATCCTCAGAAGTTGCATATGTTCTTTTCGAGGTTTGGGGAGATTGAGGAAGGACCATTGGGGCTGGATAAGCTGACTGGGAAACCAAAAGGATTCTGCTTGTTCGTGTACAAGAGCGTTGAGAGTGCCAGAAAGGCGTTAGAAGAGCCACACAAGGAGTTTGAGGGCCATATTTTGCACTGTCAGAAGGCAATAGACGGTCCAAAGCCAGGAAAGCCTCAATATCAGCAACATCAGAATTCTCAGAGAACCCAATTCCAGAGAAATGAGAACCCTACATATGTTGGTGGATCGACCACTGGACCAGGACACCTGATGGCGCCAGCGGGACCAGGAATTGGATATAACCAGGGTGCAGCGGCTACGCAGACACTGAACCCGACTATTGGGCAGGCATTGACAGCACTGCTTGCAACTCAAGGTGCTGGTTTGGGACTGACTAATTTATTAGGGACTCTAGGATCAGCTGCCGCAGTGAACCCAGGTGTTCCTGCTGCTGCAGGCCATGGAATGCAAGGTGGATACAGTAACCAATCAAATATAAGCCCGGGTGTTATTGGAGGAGGATATGGAAATCAAAGTGCCCTACAGGGGCAATATCCAAACCAGCAAATGGGACAAAGTGGCTCTGGAAGAGGGCAGCATGGTGTTGGGCAATTCATCATAAGTGCATCAGTCTTTTATTACTGGCCTGGTGATTCTTCTGACGTTTAA 1419 0.4778 MGRKRKLTPISSESVEPPLKQQQQQQLQVQPMVEDQDNDNDNPDHARSANNQASKAQSTSTAATSVTTQYRKDDDDDEPILKLLEPFSKEQILNLLCEAANKHRDVADRIRKVADEDPAHRKIFVHGLGWDTTADTLINVFKQYGEIEDCKAVSDKLSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASIGPVQQSNAVQTTPAAPQPQVSEYTQRKIYVSNVGAELDPQKLHMFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYKSVESARKALEEPHKEFEGHILHCQKAIDGPKPGKPQYQQHQNSQRTQFQRNENPTYVGGSTTGPGHLMAPAGPGIGYNQGAAATQTLNPTIGQALTALLATQGAGLGLTNLLGTLGSAAAVNPGVPAAAGHGMQGGYSNQSNISPGVIGGGYGNQSALQGQYPNQQMGQSGSGRGQHGVGQFIISASVFYYWPGDSSDV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0174 472 MobiDBLite consensus disorder prediction 308 326 - -
Sto13g0174 472 MobiDBLite consensus disorder prediction 14 36 - -
Sto13g0174 472 PANTHER - 32 453 - -
Sto13g0174 472 SUPERFAMILY RNA-binding domain, RBD 209 324 IPR035979 GO:0003676
Sto13g0174 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 189 IPR000504 GO:0003723
Sto13g0174 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 294 IPR000504 GO:0003723
Sto13g0174 472 MobiDBLite consensus disorder prediction 298 326 - -
Sto13g0174 472 PANTHER GEO13361P1-RELATED 32 453 - -
Sto13g0174 472 SUPERFAMILY RNA-binding domain, RBD 118 202 IPR035979 GO:0003676
Sto13g0174 472 CDD RRM_RBM24_RBM38_like 224 299 - -
Sto13g0174 472 MobiDBLite consensus disorder prediction 45 68 - -
Sto13g0174 472 MobiDBLite consensus disorder prediction 1 73 - -
Sto13g0174 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 214 IPR000504 GO:0003723
Sto13g0174 472 Gene3D - 203 336 IPR012677 -
Sto13g0174 472 SMART rrm1_1 122 194 IPR000504 GO:0003723
Sto13g0174 472 SMART rrm1_1 225 297 IPR000504 GO:0003723
Sto13g0174 472 Gene3D - 20 202 IPR012677 -
Sto13g0174 472 CDD RRM_RBM24_RBM38_like 121 196 - -
Sto13g0174 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0174 Sto-Chr13 1504688 1506959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0174 223 341 C2H2 Transcription Factor Family AT2G19380 31.667 1.59e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0174 K12741 - qsu:112025393 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0174 13 1504688 1506959 Sto13g0174 13 1504688 1506959 ECH