Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0112 ATGACAGCATATAGACAAGATGGATCCATTGAGCATGCTGCTCCTGTAGCTGCTAACCTTCATCCACAGGCAGTTTCCCAATCACATAACAACTACTGCAGTTATGAATCCAATCACATAACATTGAACTCAAAGGTTCTTAACTGCATAATGCCTTTTCCAATGTTTCGTGAAGAATGCTGTTGGTGTTACGAGGATGAAAAGGGATTGAAACATGGGCCCCATTCCATTTTGGAATTAATTTCCTGGCATCGGTATGGACACCTCCAAGATTCATCGGTGATTCATCATACTGAAAACAAGTGTAGCCCCTTTGTGCTTTTGTCTGCTGTAAATGCGTGGAAAACAGATAAGTGTGAGAACATCTGTAAATCAGGTTCAGAAAATGAAACTGATAAGGCAAGCTTCATCAATGAAATATCTGAGGATATTTCGTCTCAGCTGCACATGGGAGTCATGAAATCCGCCCGCAAGGTTTTGTTGGACGAGATTATTGGCAGCACTATTGCAGAATTTGTTACTGAAAAGAAATTTAAGAAGCGTAAGCTTGATTCAGTTGATCAGCCTTCTGAAACTAGCTTGGTTGAGGTTGTTGTGGAGAAGAGAAAAGGCACTTCTCTTCCAAATGCGGCAGCATCTTCCCAAACATTTAAGGATCAGTCTTGTCAAGAAATTTCCAGAGTGTCTCCAACAAGAACTAAATCAGTTGGAAGCATTGAAAATTTCTGGTGGTCATATGCTGTTGTTCGTAAAGTACTTTGTGATTATTGCATGCAAGTGATGTGGAATGCTGTGTTTTATGACACTGTGGCAGAGTACTTGCATTCCTggaaaaagagaaaactttGGTCTGTTCATCCTAAGCCTCATCAATCTATTAATGGATGTAGAAATTATGCTGGAAATATCAAATCAGAAGAAGCTTTGGTTCTCAGGTCAGGTTCCTCTGAAAATGTTGTTGATGGCTATCCTCATTCTGGAGTGGTGACACTGGAAAGAGATAATCATAGTCAGTTATCCTCCATGTCTTCTGTTATCCTCAATGATGGAAACTTTCTAGGAAGTGATCATAGTCGTAAAGATTTGTCATGCATTCTTGAAAGTGTGGAGAATGAGCTTCACTTGTCTTCAAAGGTGTCTTTAGCTGAATATGTTAGAAGTTTCATTGACAAGGaagttaaaaaattagttaattttGCTGAAGAAGACAACTTGAGCAAGGATGCTGTCAGAGGTGGTGGTCTTTCAGAGACACTTGATGACAAGATAGCTAAGAGGGAAATTTTATCTGACAAATTTGTGGTTCCTATAAAAGCAGAAGATTCATTTAATGATTCTGCATCTGGAAAGCGTATGTCTAATTTATTCTCAAGTGCATTTCAGGAGTTGGGTGCGCATGCAGGTGATGTAATTGATGGAGGGGAGATTGGTGACATACCACCTCCTGGATgtgaaaagaattcaagaactaTTGTTCCACCATACAAGTATAAATATCGACCTTCAAGGGTAGTTGAAAGTGTTCCTAAGATAACAAAATATGTTGCAACAGCACTGTGCCGACAGAAGTTGCATAATGAAGTTCTTAAAGAGTTGAAAGCTAAGTTTCTTGATGCTGCATTCCATCAAATTTTCATATCATTATGCCCTAAAGAGAAAGTCTGCCAACCTGATGGTCAAAGGGAAGAGAAGGCATGCAATTTGAATGAGGAACTTTTAGATGATCTGACATCTGGACTGGGAAGAAAGAGGAAAACACCAAAAAATTCTTCATCGGGAGCTTCTCTTGTGATTGGGGAATGTACAGATTACCGCAAGAAAATGCCACAGAAAAAGCTAGGATTTCCTCAACGTGTAGCTGCTGATGAATCTGGTTTTGGCAATAAACAAGTGGATAAGTTAAAGAAACATGTTTCTGGGGATCAGGTTGACTATAGAGACTCTGAAACAGCTGCTGTTAAACCTGAAAAGAGAAAGCTAATTAGATGGAAGAAGGATAAATCTGCTAATGGCAAGCCTTCTGCTGTCATTGCCAAAAGCAACTTGGACAGTAAGCTGTCATCCTTGAAGAATGCAGCTAGTAAAAAAGTATTGAAGCTTGCAGATGATGTTAAGGATGTTGAAAAATGCAATGGAGATAGGCTTTTATCTGTCACAGAAAATAAAGTTTGCATGAAAAAGCTAATTGATAGCAATGGTCGTGATGGTGCCATTCATGGAAAGTCCACTCGTCATTGCTCCAAGGAGACCCTTAAtgCAACCAAAAAAGcatcaaaaccaaaaaaaaggaaGCATCCAGTGGACAATGCACCGTCCTCACGTCCTGCAAAGTCTTTGAAAGTTTCGTATGATAGCTCGAAGGTTCGAGTTGGTGGACAGGCTAACATGACAAAGCTGAAGTCTGTTAAATCCAAGCCCTTGAATTTATGTCCTAGATCTGATGGATGTGCTAGGACTTCTATTGATGGCTGGGAATGGCATAAGTGGTCTGTAAATGCCAGTCCTGCCGATAGAGCACGTGTCCGGGGGAATCTATGCATTCAAAAGAAGTGTATGCCATCTGATAGTAATTCAACTCATTGGTCAAATGGTAAGGGTCTTTCTGCGAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCTGCTGAGGGTGCTGATCTTCTGAAAGCTACTCAGTTGAAGGCAAGGAAAAAGCGTTTACGTTTTCAAAGGAGCAAAATACACGATTGGGGTATTGTTGCCTTGGAGCCCATTGAAGCAGAGGActttgtgattgaatatattggAGAACTAATTCGTCCTCGGATCTCAGATATACGTGAACGTCAGTATGAGAGGATGGGAATCGGAAGCAGTTACCTGTTTAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAAAGGTGGGATTGCGAGATTCATAAACCACTCTTGTGAGCCTAATTGCTATACCAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCAAAACGTCATATAGCTGCTGGTGAAGAAATTACATACAACTATAAGTTCCCTTTGGAAGAGAAAAAGATTCCCTGCAACTGTGGCTCGAAAAAGTAA 3099 0.3924 MTAYRQDGSIEHAAPVAANLHPQAVSQSHNNYCSYESNHITLNSKVLNCIMPFPMFREECCWCYEDEKGLKHGPHSILELISWHRYGHLQDSSVIHHTENKCSPFVLLSAVNAWKTDKCENICKSGSENETDKASFINEISEDISSQLHMGVMKSARKVLLDEIIGSTIAEFVTEKKFKKRKLDSVDQPSETSLVEVVVEKRKGTSLPNAAASSQTFKDQSCQEISRVSPTRTKSVGSIENFWWSYAVVRKVLCDYCMQVMWNAVFYDTVAEYLHSWKKRKLWSVHPKPHQSINGCRNYAGNIKSEEALVLRSGSSENVVDGYPHSGVVTLERDNHSQLSSMSSVILNDGNFLGSDHSRKDLSCILESVENELHLSSKVSLAEYVRSFIDKEVKKLVNFAEEDNLSKDAVRGGGLSETLDDKIAKREILSDKFVVPIKAEDSFNDSASGKRMSNLFSSAFQELGAHAGDVIDGGEIGDIPPPGCEKNSRTIVPPYKYKYRPSRVVESVPKITKYVATALCRQKLHNEVLKELKAKFLDAAFHQIFISLCPKEKVCQPDGQREEKACNLNEELLDDLTSGLGRKRKTPKNSSSGASLVIGECTDYRKKMPQKKLGFPQRVAADESGFGNKQVDKLKKHVSGDQVDYRDSETAAVKPEKRKLIRWKKDKSANGKPSAVIAKSNLDSKLSSLKNAASKKVLKLADDVKDVEKCNGDRLLSVTENKVCMKKLIDSNGRDGAIHGKSTRHCSKETLNATKKASKPKKRKHPVDNAPSSRPAKSLKVSYDSSKVRVGGQANMTKLKSVKSKPLNLCPRSDGCARTSIDGWEWHKWSVNASPADRARVRGNLCIQKKCMPSDSNSTHWSNGKGLSARTNRVKLRNLLAAAEGADLLKATQLKARKKRLRFQRSKIHDWGIVALEPIEAEDFVIEYIGELIRPRISDIRERQYERMGIGSSYLFRLDDGYVVDATKKGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCNCGSKK 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0112 1032 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 23 1032 - -
Sto13g0112 1032 Gene3D SET domain 832 1032 IPR046341 -
Sto13g0112 1032 Pfam SET domain 911 1015 IPR001214 GO:0005515
Sto13g0112 1032 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 23 1032 IPR044570 GO:0042800|GO:0051568
Sto13g0112 1032 CDD SET_SETD1 887 1032 - -
Sto13g0112 1032 ProSiteProfiles GYF domain profile. 59 109 IPR003169 GO:0005515
Sto13g0112 1032 SUPERFAMILY SET domain 895 1031 IPR046341 -
Sto13g0112 1032 MobiDBLite consensus disorder prediction 748 780 - -
Sto13g0112 1032 Gene3D - 52 145 IPR035445 -
Sto13g0112 1032 SUPERFAMILY GYF domain 55 111 IPR035445 -
Sto13g0112 1032 ProSiteProfiles SET domain profile. 899 1016 IPR001214 GO:0005515
Sto13g0112 1032 SMART set_7 899 1022 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0112 Sto-Chr13 953246 960320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0112 898 1028 C2H2 Transcription Factor Family AT2G23740 36.601 1.91e-16 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto13g0112 SET 6.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0112 - - gmx:100806034 1122.07