Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0107 ATGTTCGCGACGGCGCCGTTTTCCCCTGTCTACGCTTTCCCTATGGCCACCGTTCGAACATTCGACTCCAATTCAACCCATCCTTTTCCTTTTCGTTTAAAGCTCAGAGCCACTCTACAAGACTATCCACTTGCAAGCAAAATTGTGGTTAAAAATTTACCATACTCCACTTGTGAGACTACTCTTGAGAAGGAATTTTCAAATTTCGGAGAGATAGCTGAAGTGAAATTGCTTAAGGACACCGCGGAAAGATCTAAAGGACGTGCTTTTATTCAGTATACTTCTCAAGACGATGCCATGCTTGCACTAGAAACCATGGATCAGAAGGTATTTGATGGGCGCATGATTTTTGTGGAAATTGCAAAACCTGGGAGAGATGCTTTTGGTGAACGCCCAAAGACCTCAGGACCCCCAAAGAAGCAGAATTTGCCAGAGCAAGAGGATGTGGCAGATTGCTGGTACTGA 465 0.4473 MFATAPFSPVYAFPMATVRTFDSNSTHPFPFRLKLRATLQDYPLASKIVVKNLPYSTCETTLEKEFSNFGEIAEVKLLKDTAERSKGRAFIQYTSQDDAMLALETMDQKVFDGRMIFVEIAKPGRDAFGERPKTSGPPKKQNLPEQEDVADCWY 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0107 154 Gene3D - 35 148 IPR012677 -
Sto13g0107 154 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 115 IPR000504 GO:0003723
Sto13g0107 154 SUPERFAMILY RNA-binding domain, RBD 24 129 IPR035979 GO:0003676
Sto13g0107 154 MobiDBLite consensus disorder prediction 127 154 - -
Sto13g0107 154 CDD RRM_SF 48 119 - -
Sto13g0107 154 SMART rrm1_1 47 119 IPR000504 GO:0003723
Sto13g0107 154 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 123 IPR000504 GO:0003723
Sto13g0107 154 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 32 149 - -
Sto13g0107 154 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 32 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0107 Sto-Chr13 897076 899424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0107 43 145 Eukaryotic Initiation Factors Gene Family AT2G36660 30.769 2.85e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0107 - - pper:18779685 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0107 13 897076 899424 Sto13g0107 13 897076 899424 ECH