Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0098 atGAATTTTAGGTTCTTCAAGGAGTGTCCTCATCCTGATGAGAATCAAAGAAGTGAGTTAGGAAGAGAGCTTGGACTCGAAACTAAACAAATCAAGTTTTGGTTTCAAAACAAGAGAACACAAATGAAGACTCTGACGGAAAGAATGGATAACAATGTTCTTCGTGCTGAGAATGAAAGGATGCAATGTGAGAACTTAGCCATCAAAGAAGCACTCAAAACTGTGAATTGTCCTCAGTGTGGTGGTCCTGCTGCCTTAGTAGGGACTGATGAAAGAGAGCTCACTATTCAGAAGCTGCTTCAAGAGAATGCTCATCTCAGACAAGAGGCTAGCTag 336 0.4107 MNFRFFKECPHPDENQRSELGRELGLETKQIKFWFQNKRTQMKTLTERMDNNVLRAENERMQCENLAIKEALKTVNCPQCGGPAALVGTDERELTIQKLLQENAHLRQEAS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0098 111 Gene3D - 3 63 - -
Sto13g0098 111 CDD homeodomain 4 43 IPR001356 GO:0003677
Sto13g0098 111 SUPERFAMILY Homeodomain-like 4 53 IPR009057 -
Sto13g0098 111 Pfam Homeodomain 4 43 IPR001356 GO:0003677
Sto13g0098 111 ProSiteProfiles 'Homeobox' domain profile. 1 45 IPR001356 GO:0003677
Sto13g0098 111 SMART HOX_1 1 49 IPR001356 GO:0003677
Sto13g0098 111 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 109 - -
Sto13g0098 111 PRINTS Lambda-repressor HTH signature 16 25 IPR000047 GO:0003677
Sto13g0098 111 PRINTS Lambda-repressor HTH signature 25 41 IPR000047 GO:0003677
Sto13g0098 111 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 109 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0098 Sto-Chr13 816407 817191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0098 6 109 Homeobox Transcription Factor Family AT1G73360 59.615 1.50e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto13g0098 Homeodomain 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0098 K09338 - twl:119995606 157.532