Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0089 ATGGTTTCGACGATTGAGACGACAGAGGCCGAATTGTCGGACAATTTCTCTTCTCCGACACCGCCCTCGTCCTCCTCGGAAATGTCAAATCGCGCGGCTTCCTCGCTGGTTCAGATCTGGGAGAAAAGGCTCAACAACAACAGCAATCAATCCGACGATGCCACGTCCATCGACGAATCATCGTACTCGGACTCAACGTCCTCGTCGGAGAGGGTATTATCGTCGTCAAATGAAACAACGAGTTGTTCCTCGTCATCACAAACCCTAGCGCGTGGCGTCTCGGACGCGGCGGCGGAGAGGGTGAGAGTGGCGGATATTATAAAGAGGTTTAAGTTATCGTGTGGGGATCACGAGAGTAATAATGACCAATATTGTAATAATAATATGGCGATGATGGGATCGTCGTCGTCAGGATGCTTGACGAGATCGCGTTCGTTGACGAAACTACGAGTGCGTCctaataacaacaataactcGTCAATGACGATGTTAACGGAACCAAAAGCGGCGCAACACACGAGTTTTCTTCACGTGTTGAGCTCGCCAAGGATAAGAGGGAGGCGAGCATTTACGGATTTGCTTATGCATATGGAACGTGAGAGATATGGAGAGCTCAAACTCCTAGGTCAGAAAGCAGCTGTTTCCAAGTTTTCACAAAAAGGCCGCATTCAGTCGATGCTTCGGCTTAAATTATTACAACGTGGTCAATGTCGCCGAGATTCATCATCGACAACAACAACATCATTTGAAGTGAATAAACCACCACAAGGATCCGCCATTATGCACCTTAGGGAAAGATTCAACATAAAGGTTGAAAGCCAGCAAACAGAAGTAGGAAGTCCAAGAAGTAGTCATCATCATCAGCAAATCAGCAAAGACCCTCAGAACAATAACACTCATAGCCATACTCAGATAATCAATGAAGAAGAACCAATTATTAGTGTTATAATCCCAAGTTCTTCAGAAACATTATGCTTGCAGGCTCAAAGTATTAATAATGTTGACCCACAACCTCATAATAATGATcatcaagaagaagaagtagaaaTTAATAATGTGGAAGCTCATCAAAATGCTGAAGAAATTGTGGAGACAATAACAATTGATTCAAATgaaaatgatgatgaagaggCAAAGGTAGAGGAAGTGGAAGAGAAGTATGATAATCATAATAGTAGTACTATTATTGCTGAAGCTGATCAAAGTAGTAATTATGTTATGGAGGAAagagttaataataataataataataataataatattgaagaagaagaagatggaaatTATGAGGAGTTAGAGGGAGAGGAGGGTAGTGATGAGCAACAATAttatgatgaagaagatgatgagacATATTTTGATTGGATTAGTCATATTTCTCGGCCTAGAAGCTATTGGGAAGATCGCAGACAAGCATGGTATAAGGAAATGCTTGATAGTACTTGTACTTCTGACAAACAGCCTGAGATTCGTCAGCTTCTTGAAAGGAGAACAGTGTCTACTTTCCTGTCTAGTGACTTCAGGGAAAGAATGGACAAACTGATGGAATCCCACATAGGAACACAAACACACCTTACATGGAGTTATAGAGACAGCAATGATCAAGCAAGTGAGGATTCTGATAGAATCGAGTCTTCTTCCTCAACTCATCATCAACCTTCTTCTATATCTTTATCTCAATCTCCTTTTCAAGATAATCACAAttcctcctcatcatcatccatCACTCGTCATTCTTCAAATATTGAAATGGAACTTATATATGATTTGAGAGGGCAGATGGAGCAAATGCATAGAGAGATGATTGAGATCAGAAATTCAATAAAGGCTTGCATGGATATGCAAATGGCTTTCCAACAATCAATGAAACGAGAGGTTAAAACAGtgaaagaaaagaagaagaagtccCATGAGAGGCCCAAGAAAGGCAATTGTTGTATTTGCTATGAGAAGAAAGTTGACTCAGTTTTATACAGATGTGGGCATATGTGTGCTTGTCTCAAGTGTGCCAATGAGTTGCAATGGAATAGTGGAAAATGTCCAATATGTTGGGCTCCAATAGTTGATGTTGTAAGAGTATATGTGAATGAATGA 2094 0.3801 MVSTIETTEAELSDNFSSPTPPSSSSEMSNRAASSLVQIWEKRLNNNSNQSDDATSIDESSYSDSTSSSERVLSSSNETTSCSSSSQTLARGVSDAAAERVRVADIIKRFKLSCGDHESNNDQYCNNNMAMMGSSSSGCLTRSRSLTKLRVRPNNNNNSSMTMLTEPKAAQHTSFLHVLSSPRIRGRRAFTDLLMHMERERYGELKLLGQKAAVSKFSQKGRIQSMLRLKLLQRGQCRRDSSSTTTTSFEVNKPPQGSAIMHLRERFNIKVESQQTEVGSPRSSHHHQQISKDPQNNNTHSHTQIINEEEPIISVIIPSSSETLCLQAQSINNVDPQPHNNDHQEEEVEINNVEAHQNAEEIVETITIDSNENDDEEAKVEEVEEKYDNHNSSTIIAEADQSSNYVMEERVNNNNNNNNNIEEEEDGNYEELEGEEGSDEQQYYDEEDDETYFDWISHISRPRSYWEDRRQAWYKEMLDSTCTSDKQPEIRQLLERRTVSTFLSSDFRERMDKLMESHIGTQTHLTWSYRDSNDQASEDSDRIESSSSTHHQPSSISLSQSPFQDNHNSSSSSSITRHSSNIEMELIYDLRGQMEQMHREMIEIRNSIKACMDMQMAFQQSMKREVKTVKEKKKKSHERPKKGNCCICYEKKVDSVLYRCGHMCACLKCANELQWNSGKCPICWAPIVDVVRVYVNE 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0089 697 Coils Coil 366 393 - -
Sto13g0089 697 PANTHER BNAC05G24000D PROTEIN 1 525 - -
Sto13g0089 697 PANTHER BNAC05G24000D PROTEIN 526 696 - -
Sto13g0089 697 MobiDBLite consensus disorder prediction 273 301 - -
Sto13g0089 697 PANTHER BNAC05G24000D PROTEIN 526 696 - -
Sto13g0089 697 PANTHER BNAC05G24000D PROTEIN 1 525 - -
Sto13g0089 697 MobiDBLite consensus disorder prediction 423 442 - -
Sto13g0089 697 ProSiteProfiles Zinc finger RING-type profile. 645 683 IPR001841 -
Sto13g0089 697 MobiDBLite consensus disorder prediction 1 92 - -
Sto13g0089 697 SMART ring_2 645 683 IPR001841 -
Sto13g0089 697 MobiDBLite consensus disorder prediction 547 577 - -
Sto13g0089 697 Pfam Zinc finger, C3HC4 type (RING finger) 642 689 - -
Sto13g0089 697 MobiDBLite consensus disorder prediction 1 95 - -
Sto13g0089 697 MobiDBLite consensus disorder prediction 530 577 - -
Sto13g0089 697 SUPERFAMILY RING/U-box 634 690 - -
Sto13g0089 697 MobiDBLite consensus disorder prediction 411 442 - -
Sto13g0089 697 CDD mRING-HC-C3HC5_NEU1 644 683 - -
Sto13g0089 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 696 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0089 Sto-Chr13 751301 756741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0089 645 696 C3H Transcription Factor Family AT3G06140 40.385 2.80e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0089 - - vun:114162588 359.762