Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0060 ATGGCTGAACCTGAGAAAACGGTGAAATCTGTCGATAACCATCAACCAATGCAAGAATCAAGTAATGAGGGTGTGAGGGGTTCAGGTGATATAAGAGTGTCAGCAAGATTTGATTATGTGAGGGACATGTGTAAGGAGTACAAAGAGAGTGGTGATTGCAGATATGGTGATTCGTGTGTGTTTAGAAAGGCAATTAACAAGAAGAATTTCAGAAAACGCATAATGAATAATGATGAGGATGATCATGGTGGCTCGGAAACGGAAAGCCGTATGATGAAGAGTGAAAGAAAGAGCATGAAAGCTGataataaattgtttttttcgAGTAAAAGCTCCACATCATCTGGAAGGCAAGATGAGTTTGATCAGTTTTTTCAATCTTCAAAAGAGATTCAAGTTGAAGATGATAGGAGAGCAACGAGGATGCTAGAAACTGAGACTGAATTTTCTAGAGAAGCCCGAGCTGACAAGTTGAAGAAGAGAAAAGGCACAAACGAAAAGTTGTATGAGGGCATCAAGAATTACACAAATTATAAGGATGATGGGTCACATCATGGGCCTTTGAGGGCTTCACCTTATATAAGAGTGTCCGTAAGAATTGATCATCAGCTTGATATATGTAAAGATTACAAGGAGACTGGCTATTGTGGATATGGTGATTCTTGTAAGTTTATGCATGATCGGACTGATTATAAGTCTGCACGCCACTTGGAGAAAGAATGGGATGAAGCACACAAAGCAAAGAGGATGAGATCAAGATAA 762 0.3885 MAEPEKTVKSVDNHQPMQESSNEGVRGSGDIRVSARFDYVRDMCKEYKESGDCRYGDSCVFRKAINKKNFRKRIMNNDEDDHGGSETESRMMKSERKSMKADNKLFFSSKSSTSSGRQDEFDQFFQSSKEIQVEDDRRATRMLETETEFSREARADKLKKRKGTNEKLYEGIKNYTNYKDDGSHHGPLRASPYIRVSVRIDHQLDICKDYKETGYCGYGDSCKFMHDRTDYKSARHLEKEWDEAHKAKRMRSR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0060 253 Gene3D - 204 233 - -
Sto13g0060 253 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Sto13g0060 253 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 61 IPR000571 GO:0046872
Sto13g0060 253 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 206 227 IPR000571 GO:0046872
Sto13g0060 253 MobiDBLite consensus disorder prediction 13 27 - -
Sto13g0060 253 ProSiteProfiles Zinc finger C3H1-type profile. 206 229 IPR000571 GO:0046872
Sto13g0060 253 PANTHER ZINC FINGER PROTEIN 183 20 61 IPR039971 -
Sto13g0060 253 PANTHER ZINC FINGER PROTEIN 183 60 249 IPR039971 -
Sto13g0060 253 PANTHER RING FINGER PROTEIN 113A1-RELATED 20 61 - -
Sto13g0060 253 PANTHER RING FINGER PROTEIN 113A1-RELATED 60 249 - -
Sto13g0060 253 MobiDBLite consensus disorder prediction 75 103 - -
Sto13g0060 253 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Sto13g0060 253 SMART c3hfinal6 202 228 IPR000571 GO:0046872
Sto13g0060 253 MobiDBLite consensus disorder prediction 1 29 - -
Sto13g0060 253 SUPERFAMILY CCCH zinc finger 200 232 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0060 Sto-Chr13 449196 451379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0060 21 61 C2H2 Transcription Factor Family AT1G01350 63.415 1.38e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto13g0060 zf-CCCH 3.4e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0060 K13127 - gmx:100787434 203.756