Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0041 ATGGAAAGCATACCGCATCCAATACCTCGAACGGTGGAGGAGGTTTACAGCGACTATAAGGGCAGAAGAGCTGGAATGATTAAGGCCCTTACTACGGATGTTGAAAAGTTCTATCAGCAGTGCGATCCTGAGAAGGAGAATTTATGCCTCTATGGATTTCCAAATGAAACATGGCAAGTGAATTTGCCAGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTGGGTATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGACTGGTTATCACTGGTTGCAGTTCATAGTGACTCATGGCTGCTTGCCGTTGCTTTCTACTTTGGTGCCCGATTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAAATGATAAATGATCTGCCAACTATATTTGAAGTTGTGACTGGAAGTGCTAAGCAATCAAAGGATCAATCAGCTGCTCAAAATAATGGTAGCAAAAGCAAATCAAGTGGGAAGGTGTCCCGCCAATCTGAGTCTCAGGCAAAGGGAGTGAAGATGTCACCACCACCCAAAGAAGAGGATGAGAGcggagaagaagatgatgaacaAGGTGCAACATGCGGAGCATGCGGTGATAATTATGCCAACGACGAGTTCTGGATCTGTTGTGATGTGTGTGAGAGATGGTTCCATGGCAAATGTGTGAAAATCACTCCAGCTAAGGCTGAGCACATTAAGCAATACAAGTGCCCAAGCTGCAGTAACAAGAGGGCTAGAGTTTAG 753 0.4382 MESIPHPIPRTVEEVYSDYKGRRAGMIKALTTDVEKFYQQCDPEKENLCLYGFPNETWQVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSAKQSKDQSAAQNNGSKSKSSGKVSRQSESQAKGVKMSPPPKEEDESGEEDDEQGATCGACGDNYANDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0041 250 Pfam PHD-finger 197 246 IPR019787 -
Sto13g0041 250 MobiDBLite consensus disorder prediction 144 192 - -
Sto13g0041 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Sto13g0041 250 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 247 - -
Sto13g0041 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Sto13g0041 250 SUPERFAMILY FYVE/PHD zinc finger 185 247 IPR011011 -
Sto13g0041 250 SMART PHD_3 196 244 IPR001965 -
Sto13g0041 250 MobiDBLite consensus disorder prediction 144 173 - -
Sto13g0041 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Sto13g0041 250 CDD PHD_AL_plant 197 246 IPR044104 -
Sto13g0041 250 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Sto13g0041 250 PANTHER CPG BINDING PROTEIN 1 247 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0041 Sto-Chr13 295522 300906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0041 1 247 Alfin-like Transcription Factor Family AT1G14510 81.124 4.88e-134 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Sto13g0041 Alfin 1.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0041 - - gmx:100807826 464.536