Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0032 atgaatatgGAAGTGTCAAGTGAAGAAGGAGAGATCCCAATCCCAATCCCAATCAATGCTAGTAATGGGCATGGGCATGGGCACATGAACATCCATCGTCATCATCATGACCCCTTAAATGGAGGAGCAGGTGCAGGTGGCCTTGACCTGGACCTGGACCTGGATCAGGACGATGAAACTCAAGACCAGCCTGGAGGAGGAGGCGGATACGGGTACGGATACGGATACGGGtcgaggaagaagaaaggaggaggaGTGGGTGTGAAGTATAGAGAATGCTTGAAGAACCATGCAGCGTCGATGGGAGGAAATGCGACTGATGGATGTGGAGAATTCATGGCTAGTGGAGAGGAAGGGTCCATGGAAGCCCTCACCTGCTCTGCTTGTAACTGCCACCGCAACTTCCACCGCAAGGAACTCCTTCCTCCTCACTCTCACTCGCATTTCctccttcctcctcctccttccacTGTGCTTCCTTCTAGAATGATCATgcctcatcctcatcctcatgCTCATCCCTATCACTACTCCTCCTCCGAGCCCTTGTGTATGTCCACATTCCAacagcatcatcatcatcatcatgaggAGAATATTAGTGATCAGCACAACAAGCAGCATAACAAGAAGAGGTTTCGGACAAAGTTCACGGCGGAGCAGAAACAGAAGATGCTAGGGTTTGCGGAGAGAGTGGGATGGAAGATTCAGAAGCAGGAAGAGTCTGTGGTTCACCAATTCTGTCAGGAGATTGGAGTCAAGCGTCGTGTTCTTAAGattcTAAAGAGCATTAAATTGGAATAG 804 0.4328 MNMEVSSEEGEIPIPIPINASNGHGHGHMNIHRHHHDPLNGGAGAGGLDLDLDLDQDDETQDQPGGGGGYGYGYGYGSRKKKGGGVGVKYRECLKNHAASMGGNATDGCGEFMASGEEGSMEALTCSACNCHRNFHRKELLPPHSHSHFLLPPPPSTVLPSRMIMPHPHPHAHPYHYSSSEPLCMSTFQQHHHHHHEENISDQHNKQHNKKRFRTKFTAEQKQKMLGFAERVGWKIQKQEESVVHQFCQEIGVKRRVLKILKSIKLE 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0032 267 SUPERFAMILY Homeodomain-like 196 260 IPR009057 -
Sto13g0032 267 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 90 139 IPR006456 -
Sto13g0032 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 153 IPR013087 -
Sto13g0032 267 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 210 260 IPR006455 -
Sto13g0032 267 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 81 260 - -
Sto13g0032 267 ProSitePatterns Zinc finger C2H2 type domain signature. 126 148 IPR013087 -
Sto13g0032 267 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 89 139 IPR006456 -
Sto13g0032 267 MobiDBLite consensus disorder prediction 189 211 - -
Sto13g0032 267 Pfam ZF-HD protein dimerisation region 88 139 IPR006456 -
Sto13g0032 267 Gene3D - 195 261 - -
Sto13g0032 267 MobiDBLite consensus disorder prediction 189 206 - -
Sto13g0032 267 MobiDBLite consensus disorder prediction 31 73 - -
Sto13g0032 267 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 81 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0032 Sto-Chr13 225018 227124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0032 3 260 ZF-HD Transcription Factor Family AT2G02540 44.521 6.06e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sto13g0032 ZF-HD_dimer 6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0032 - - thj:104805132 199.134