Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0009 ATGGAGGATTCTGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACTGCTCCCGCCAACCCGAACGCCCCTTCCGGACCTCTACTCCAATCTGATTCTTCTGCCGCTGCTTCCACAGTAGTCAACGGCGTCGCACCGGGCGCCACCGCCGACCATGCGGCAGGCAATGTTCCAGGTCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTTCGTGGACTCTGCATGAAGGGCGACGCCTGCGGCTTCTTACACCAATATGATAAAGCGCGGATGCCAGTTTGCCGGTTTTTTAGATTGTACGGGGAGTGTCGCGAGCAGGACTGCGTGTATAAGCACACCAATGAAGATATCAAGGAATGTAACATGTACAAGTTAGGATTTTGTCCCAATGGCCCTGATTGCCGGTATAGGCATGCAAAAGTCCCTGGACCTCCACCACCTGTTGAAGAGGTGCTTCAAAAGATTCAGCATTTATATTCTTACAATTATGCCTCCTCTAACAAATTTTTCCAACAAAGGGGTGCTGCTGGCTATTCTCAACAAGCTGAGAAATCTCAGTTGCCACAAGGTCCTAATTCTGCAAACCAAGCTGTACCTGGAAAGCCATTAGCGGCAGAGTCTGGTAATgttcagcagcagcagcagcagcagcaacaaCAAGTGCAACAATCTCAGCAGCCGGGTAGCCAGAGTCAAATACAGAATGTTCCTAGTGGCCAGCCCAATCAAGCAAACAGAACTGCCACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAACCGTGAAAATTTGGAGCTGTCTGTACAACAAGGAGTATGGGCAACTCAGAGAAGCAACGAGGCTAAACTGAATGAAGCCTTTGACTCTGTGGAAAATGTGATATTAATCTTCTCAGTCAACAGAACACGGCATTTTCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGTGGAAACTGGAAATATGCACATGGGACTGCACATTATGGGCGTAACTTCTCAGTCAAGTGGTTAAAGCTATGCGAATTGTCATTCCATAAAACACGTCATTTGAGGAATCCGTACAATGAGAACTTACCAGTAAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCGGATAGTGAACTTATGGCTGTCTCACTTGCAGCAGAGACTAAGCGAGAagaagagaaagcaaagggagtaAATCCAGATAATGGAGGAGAAAATCCGGATATTGTACCATTTGAGGACAAcgaagaggaggaagaggaagaaagtgACGAAGAGGAGGAGAGCTTTGGCCATGGTCTTGGACCAGCTACTCAAGGTAGAGGCAGAGGCAGAGGTATGATGTGGCCTCCTCACATGCCTATGGGACGTGGAGCCAGACCTATGCCAGGAATGCAGGGTTTTCCCCCAGTAATGATGGGTGATGGATTATCCTATGGACCAGTTACGCCTGATGGATTTGGTATGCAAGATCTTTTCGGCATGGGCCCCCGTGGTTTTGCTCCATATGGTCCTAGGTTCTCTAATGATTTTGCCGGGCCCCCGGCAGCCATGATGTTCCGTGGGCGACCGTCACAACCTGGGATGTTTCTGGGTGGTGGGTTTGGGATGATGATGAATCCAGGACGTGGTCCCTTTATGGGGGGGATGGGGGCTGCAGGTGCAAATCCACCACGAGCAGGTAGGCCAGGTGGTATGCCTCCGATgttcccaccaccaccaccacctcagAATGCTAACCGTGTTATTAAGAGAGATCAAAGAAGTAATGATCGAAATGATAGGTATGGTTCAGGAATAGAGCAAGCCAAGGGTCAAGACTCGGTGAATCAAAGTGGTGGACCTGATGATGACATGCAATATCAGCAGGAGGATCAATATGGTGCTGTGAACAACCTTAGGAATGACGAGAGTGAAAGCGAGGATGAAGCACCTCGGCGGTCTAGACATGGAGAGggcaagaaaagaaaaggtgaAGTTTAG 2055 0.4633 MEDSEGVLSFDFEGGLDTAPANPNAPSGPLLQSDSSAAASTVVNGVAPGATADHAAGNVPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKVPGPPPPVEEVLQKIQHLYSYNYASSNKFFQQRGAAGYSQQAEKSQLPQGPNSANQAVPGKPLAAESGNVQQQQQQQQQQVQQSQQPGSQSQIQNVPSGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAETKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGLGPATQGRGRGRGMMWPPHMPMGRGARPMPGMQGFPPVMMGDGLSYGPVTPDGFGMQDLFGMGPRGFAPYGPRFSNDFAGPPAAMMFRGRPSQPGMFLGGGFGMMMNPGRGPFMGGMGAAGANPPRAGRPGGMPPMFPPPPPPQNANRVIKRDQRSNDRNDRYGSGIEQAKGQDSVNQSGGPDDDMQYQQEDQYGAVNNLRNDESESEDEAPRRSRHGEGKKRKGEV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0009 684 MobiDBLite consensus disorder prediction 573 684 - -
Sto13g0009 684 MobiDBLite consensus disorder prediction 627 658 - -
Sto13g0009 684 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 681 - -
Sto13g0009 684 SMART c3hfinal6 64 90 IPR000571 GO:0046872
Sto13g0009 684 SMART c3hfinal6 120 144 IPR000571 GO:0046872
Sto13g0009 684 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Sto13g0009 684 MobiDBLite consensus disorder prediction 608 622 - -
Sto13g0009 684 MobiDBLite consensus disorder prediction 659 684 - -
Sto13g0009 684 MobiDBLite consensus disorder prediction 179 254 - -
Sto13g0009 684 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 681 IPR045168 -
Sto13g0009 684 SUPERFAMILY CCCH zinc finger 66 89 IPR036855 GO:0046872
Sto13g0009 684 MobiDBLite consensus disorder prediction 179 200 - -
Sto13g0009 684 MobiDBLite consensus disorder prediction 414 473 - -
Sto13g0009 684 Gene3D - 58 122 - -
Sto13g0009 684 Pfam YT521-B-like domain 339 394 IPR007275 GO:0003723
Sto13g0009 684 Pfam YT521-B-like domain 260 322 IPR007275 GO:0003723
Sto13g0009 684 MobiDBLite consensus disorder prediction 585 603 - -
Sto13g0009 684 MobiDBLite consensus disorder prediction 434 452 - -
Sto13g0009 684 Gene3D ph1033 like domains 242 398 - -
Sto13g0009 684 ProSiteProfiles Zinc finger C3H1-type profile. 118 145 IPR000571 GO:0046872
Sto13g0009 684 ProSiteProfiles Zinc finger C3H1-type profile. 64 91 IPR000571 GO:0046872
Sto13g0009 684 MobiDBLite consensus disorder prediction 210 254 - -
Sto13g0009 684 ProSiteProfiles YTH domain profile. 260 395 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0009 Sto-Chr13 76354 93722 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto13g0009 YTH 4e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0009 K14404 - gmx:100802826 1043.88