Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g2702 ATGGCGTCTAGGAATCAACCTATTTCTTCCTTGAACCCGATGCAGCACCGAGACACAACCGTCAAAGTGCGTGTTGTTCGTTTGTGGTGTGTTCTGCCTTACTCCTCCAATACAAGCAAACCTAATCCAGGTGATGTTGCAATTCAAATAGTTTTATGTGACTCTGAGAATTGTACTATTGGTGCAAGTGTACCCAGTATGTACCTGAATAAATTCAAAGGTGCTTTTGTTGAAGGTggtgtttattttatttcacgATTTGGAGACGGTGGTAGTAGAGGGAATTTCCGTATTACCACTCATGTTTTTAAGATCAACTTCCAATTTGGTACAAGCGTAATGCCTACTGTTGATGACcctaatattcataaatttggcTTTGACTGGGTGACAGCAGAGTCTATTGCCTCTGGCAATGCAGATGAGAAAACACAGGTTGATATCATTGGTTTGCTCACTAACATAGGGGATGTAATTCAGTCATCTAAAGATGACGCCTCCTCCAAAAGAGTTACTATTGAGATAGAAGATAGAGcAAGGTCCAGGGTGAGTGCTACGCTTTGGGGTCGTTACTGTGATCAGATTGAAAAGTTCATGAACAAGCACAAAGAAGGTCCTGTTGTTATTGCTTTGCAATACTGCAAGACAAAAGTATTTAATGGTCATCGTAGTCTTTCCAATTCCATGCATGCAACTCGTGTACTGAGCAACGAAGATCTTAAAGATTTCAGGGGACTTCATGATCAAGTTTCTGGAACCAATCTGAAGAGTCCTTTGATAGGAAGTTCTTCTTCATCTGTAAAATATGTTTCACGTTATGCTGATCCTTTTAATTCAGTATCGCTCTCATGCATTAGTGAGCTTCTCCTATCTGTAGATGAGTCTGTTCATTGTATTATTGGTTCTGTGCTTAAGGTTAACACAGATAAAGCTTGGTTTTATAATTCTTGCACAAAATGTAAAAGGAAAGTTGAGGAAGATGGTGAAAGCTTCTACTGTAACTACTGTTCAGCCCCGATGTCCACTGCCATCCCGAGGTTTAGGATTGAAATGGTCGTAATTGATGACTCTGCTCTTGCTAATTTTACTGTATTTGATCGTGATGCAGcaaattttttgggattaaCTGCAGAATTCATGAAGAACAAAGCAGAAAAGGTTGATGATGATTCTATGCATTCCTTAGCCGAGTTTGACAAGTTTCTTGGTATACGATTTGTGTTTAAGGTCGGGGTGAAATTGGCAACTTGGAGTCCTACTCCTTTGTTAACAATACAGGCAATGTCTTGGGATCAAGACCTTATTAAGAAGCTATCTACTGATTCCGCTTTAGATgtGGTTGCAACTGAACACTTTGGAGATACGAATATTTGTTCCAGTAACTCCCAAGATGTCACCGGTGTTGAAGTTTCTTCTCAGAATTTGACTCCTAATGTAGAAGTTGTGAAGAATAATATTGACAACGAAACAGCGAACCCAAGATATGATGTTGAAGGTCGTTCTTTGTCCTTTTCTGAAGAAGTTACATCTGAAGATCGTGTCACCACTAGCAGCAGCATGGGGAATTCATCTGAAGAAACAGCGAACCCAAGATATGATGTTGAAGGTCGTTCTTTGTCCTTTTCTGAAGAAGTTACATCTGAAGATCGTGTCACCACTAGCAGCAGCATGGGGAATTCATCTGAAGACTCAAATAATAAGAGGAGAGCCTATGACTTCAATGAAGTCAACACTGTTAGCTTAGATGTTATAAAGAAGGTTAAACTGGAGAAGTTGTAA 1779 0.3867 MASRNQPISSLNPMQHRDTTVKVRVVRLWCVLPYSSNTSKPNPGDVAIQIVLCDSENCTIGASVPSMYLNKFKGAFVEGGVYFISRFGDGGSRGNFRITTHVFKINFQFGTSVMPTVDDPNIHKFGFDWVTAESIASGNADEKTQVDIIGLLTNIGDVIQSSKDDASSKRVTIEIEDRARSRVSATLWGRYCDQIEKFMNKHKEGPVVIALQYCKTKVFNGHRSLSNSMHATRVLSNEDLKDFRGLHDQVSGTNLKSPLIGSSSSSVKYVSRYADPFNSVSLSCISELLLSVDESVHCIIGSVLKVNTDKAWFYNSCTKCKRKVEEDGESFYCNYCSAPMSTAIPRFRIEMVVIDDSALANFTVFDRDAANFLGLTAEFMKNKAEKVDDDSMHSLAEFDKFLGIRFVFKVGVKLATWSPTPLLTIQAMSWDQDLIKKLSTDSALDVVATEHFGDTNICSSNSQDVTGVEVSSQNLTPNVEVVKNNIDNETANPRYDVEGRSLSFSEEVTSEDRVTTSSSMGNSSEETANPRYDVEGRSLSFSEEVTSEDRVTTSSSMGNSSEDSNNKRRAYDFNEVNTVSLDVIKKVKLEKL 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g2702 592 Gene3D - 275 439 IPR012340 -
Sto12g2702 592 CDD RPA1_DBD_C 285 429 IPR013955 -
Sto12g2702 592 Pfam Replication factor-A C terminal domain 300 428 IPR013955 -
Sto12g2702 592 CDD RPA1_DBD_B_like 147 243 - -
Sto12g2702 592 PANTHER REPLICATION FACTOR A 1, RFA1 7 423 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto12g2702 592 Gene3D - 5 118 IPR012340 -
Sto12g2702 592 CDD RPA1_DBD_A_like 20 113 - -
Sto12g2702 592 SUPERFAMILY Nucleic acid-binding proteins 127 248 IPR012340 -
Sto12g2702 592 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 7 423 - -
Sto12g2702 592 MobiDBLite consensus disorder prediction 545 564 - -
Sto12g2702 592 SUPERFAMILY Nucleic acid-binding proteins 7 125 IPR012340 -
Sto12g2702 592 MobiDBLite consensus disorder prediction 508 529 - -
Sto12g2702 592 MobiDBLite consensus disorder prediction 484 569 - -
Sto12g2702 592 Pfam Replication protein A OB domain 139 228 IPR031657 -
Sto12g2702 592 SUPERFAMILY Nucleic acid-binding proteins 289 428 IPR012340 -
Sto12g2702 592 Gene3D - 121 256 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g2702 Sto-Chr12 25679992 25682313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g2702 4 418 Core DNA Replication Machinery Family AT5G45400 20.957 2.81e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g2702 - - soe:110778367 203.371