Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g2465 atGGAAAAGGCGGTAACATTGCAGCACCGATGTGGCTTGGATTCCGACCAAAGGATGGTGGTCCGACAAGGGAAGCTGATAGAGGCTTGCATTAACGCAAGTTTTGGAAGCCATAGGTTGAGACCTGTAGGCGGCAGAAGGCATCGACCGAGATACACGGCCAACGCATGTTCCGGTGATGTCGTTCGAAGCTTTGGAAGCTTCTGTTATGGCATGGGGAAGTCGGACGCAGAAGCAGCTGCGGTTGCATTGACGGCATCTACAATCGCCATGCAAGGAGTAGGCACgcaagaggaagacaacaaggAGGCAGGAGTTACCGGCGGCGACTTTGCCGGCGTTTTTCGTGAAGCCACTGACGAGAGATCTTGCGCTTTGACGAGAAAGGCTTGGGAAGGAGCATTTACTATTGCCTCCAATGAAAATGATAATTCAGATATGGATTGGAAACCGAAAATAGGAATGAAATTTGAAACCATAGACAAGGCTTGGGAATTTTGGAATGCTTACGGTGGAAAAATAGGTTTTGGAGTAAGGAGGTTATTTACAAACAAAAGTAAGAAAGATGGGTCAATCACTACTTGTAGGTTCGTTTGTTGCAAAGAAGGAGTAAGAAGAGCAAATAAAGGAGTTCGTAATGTTGTGAATCGTCGACTGGAAACAAGAACCGATTGCAAAGTTAAAATGGGACTTGTGAATGAGGATGGAAAATTTAAAGTGTATGATTTTGTGGAGGAGCATAACCATGTTTTACATCTTCCAAATACAACACACATGCTGCCCTCTCATCGTAGGATATCAGACGTCCAAGCACAGGAGATTGAATTGGCTGCAGATTCTGGGTTACAACAAAGAGCGGCATATGAATTTCTTAGTAGAGAAGCAGGTGGAAGAGGTAATCTAGGCTTTACTCGTTTGGATTTGAAGAACTATCTACGAACTAGGAGACAAAAGAGTTTGATAGACGGTGAAGCTGGTTGTTTATTGAGATATTTTCAAGATCAGAAATTCAAAGATCTATTATTTTTCTATGATTTTCAAATGGATAATGAAGACCAAATAACCAACATTTTTTGGGCTGATTCAAGAATGATCTTGGACTATGGTCATTTTGGAGATGTAGTCTCTTTTGATACAACATATTGTATCAACAATGTACATAGGCCACTTGCTATATTTTCAGGATTCAATCATTTCAAGGGAGGGGTAATTTTTGGGGCAGCTTTGTTGTATGATGAGACAGCGGATCAAGCTATGGCTAAGGCATTACGTGAGGTTATGCCTGAGGTTTACCACGGTTTATGCACTTGGCATCTAATGCAAAATGGCATCAAACACCTAGGCAACTTGATGAAAGGAGGGTCTCATTTTCTACGGGACTTTAAGTCCTGTATGTATCAATATGAAGAGGTGACTCACTTCGAGGAAGCTTGGAGCAAGTTATTATCACATTATAATGTTGAAGAAAATACATGGTTGTCATCAGTATACACTTTGAAAGAGAAATGGGCGGCTTGTTACATGAAGAGCGCTTTTACACTAGGAATGCGAAGCATACAACTTAGTGAAAGCTTGAATGCTAATCTCAAAAGGTACTTGACACCGAATATAAATATCAATGAATTTTTTACGCACTTTGAAAGAGTGGTGGAGGATAAGAGGTATAATGAGTTAGTATGTGAATTTAATTCGCGAGATAAGCTTCCAAGGATGAATTACTCATTGTCACCTATGGTAATTCGAGCTGCAAAGGTGTACACTCCTCCTATATTTGACGAGTTTCAATATGAATTCAACATTTCCCTTGCTTGttctataaagtataaacatgaGAGTGAAGCAGGCTTTGAATATGGCATCATTATTGTTGGTCGAGAAGTAGAATTTAGAGTATTGTTTAATCCTCCTCTAAAGGCGGTGTCTTGTAGTTGTAAGAGGTTTGAAAACTTTGGTATATTATGTGGTCATGCCTTAAAGGTACTTGAtgttaatgaaattaaaattgttcCTGATCAATACATTTTGGGGAGATGGACAAAAAATGCTCGGAGTGATGTTATACTAGATGTTAAGGAGAATGAAGTTGAGCAAGATCCTAAGCTAATTCGAATAAGACGACATAGACAACTTTGGCCTGATCTTGTATATTTAACATCTGAAGTGATTGATTCTGAAGAAGGATTCTTGTTGGTCGCAAAAGGTCTGAAAGATTTGCGTAAGCAAGCCGAGGAGCTTCTCGAAAGGGAAAAAGATGTGAACAATTTCAAGGATGATTCTATACCACCCATGAGTGCATGCACGTCACAACCAATGAGTGCATCCTCTTCACAGCCCATGGGTGCATCCTCATCACAACCAAAGGGGATCAAGAAAAGGCAAGGCAATAAGAGGACGAGATGCTATAAAAATTGGGTTGGTCAGAGGAAAAGGACACAAAGGGTCCCAAATTCGCATAGTCAGAGATCTATAaacAAACAAGTTGTAAATCAAGTGAACTCTCACTGCATTGAAGGATATGAGAATCCATTTAGTTTCACTAGATTTTTGTTGGAACCTCTTGACCTTTCTACACTATCACTTGGAGGGTTCCTGTTAGATGGAGATAATTCAAATGTGAATGACCAAGCTAGTCAACAATCATAG 2643 0.3954 MEKAVTLQHRCGLDSDQRMVVRQGKLIEACINASFGSHRLRPVGGRRHRPRYTANACSGDVVRSFGSFCYGMGKSDAEAAAVALTASTIAMQGVGTQEEDNKEAGVTGGDFAGVFREATDERSCALTRKAWEGAFTIASNENDNSDMDWKPKIGMKFETIDKAWEFWNAYGGKIGFGVRRLFTNKSKKDGSITTCRFVCCKEGVRRANKGVRNVVNRRLETRTDCKVKMGLVNEDGKFKVYDFVEEHNHVLHLPNTTHMLPSHRRISDVQAQEIELAADSGLQQRAAYEFLSREAGGRGNLGFTRLDLKNYLRTRRQKSLIDGEAGCLLRYFQDQKFKDLLFFYDFQMDNEDQITNIFWADSRMILDYGHFGDVVSFDTTYCINNVHRPLAIFSGFNHFKGGVIFGAALLYDETADQAMAKALREVMPEVYHGLCTWHLMQNGIKHLGNLMKGGSHFLRDFKSCMYQYEEVTHFEEAWSKLLSHYNVEENTWLSSVYTLKEKWAACYMKSAFTLGMRSIQLSESLNANLKRYLTPNININEFFTHFERVVEDKRYNELVCEFNSRDKLPRMNYSLSPMVIRAAKVYTPPIFDEFQYEFNISLACSIKYKHESEAGFEYGIIIVGREVEFRVLFNPPLKAVSCSCKRFENFGILCGHALKVLDVNEIKIVPDQYILGRWTKNARSDVILDVKENEVEQDPKLIRIRRHRQLWPDLVYLTSEVIDSEEGFLLVAKGLKDLRKQAEELLEREKDVNNFKDDSIPPMSACTSQPMSASSSQPMGASSSQPKGIKKRQGNKRTRCYKNWVGQRKRTQRVPNSHSQRSINKQVVNQVNSHCIEGYENPFSFTRFLLEPLDLSTLSLGGFLLDGDNSNVNDQASQQS 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g2465 880 SMART 26again6 640 667 IPR006564 GO:0008270
Sto12g2465 880 Coils Coil 732 755 - -
Sto12g2465 880 ProSiteProfiles Zinc finger SWIM-type profile. 629 665 IPR007527 GO:0008270
Sto12g2465 880 Pfam SWIM zinc finger 630 662 IPR007527 GO:0008270
Sto12g2465 880 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 117 731 IPR031052 GO:0006355
Sto12g2465 880 MobiDBLite consensus disorder prediction 760 789 - -
Sto12g2465 880 PANTHER OS03G0181600 PROTEIN 117 731 - -
Sto12g2465 880 MobiDBLite consensus disorder prediction 750 796 - -
Sto12g2465 880 Pfam FAR1 DNA-binding domain 165 251 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g2465 Sto-Chr12 23906917 23913629 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sto12g2465 FAR1 7.1e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g2465 - - ahf:112709060 679.478