Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g2280 ATGGGTAGAAAGAGAGTGACGTTTGACTACATCACTGATGATCATAAGAGAAAATTATCGTTCAAGAAGAGGCAGGAAGGCCTCAAGAAGAAGGCAAGAGAACTCAGTATTCTTTGTGGTGTTGATGTTGTTGCCATTGTTTTCAATggctttaaatttttgaaatttggatATTAG 177 0.3333 MGRKRVTFDYITDDHKRKLSFKKRQEGLKKKARELSILCGVDVVAIVFNGFKFLKFGY 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g2280 58 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto12g2280 58 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto12g2280 58 PRINTS MADS domain signature 38 58 IPR002100 GO:0003677|GO:0046983
Sto12g2280 58 CDD MADS_SRF_like 2 49 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto12g2280 58 PANTHER MADS BOX PROTEIN 3 52 - -
Sto12g2280 58 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 52 - -
Sto12g2280 58 SUPERFAMILY SRF-like 1 51 IPR036879 GO:0003677|GO:0046983
Sto12g2280 58 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Sto12g2280 58 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sto12g2280 58 Gene3D - 13 56 IPR036879 GO:0003677|GO:0046983
Sto12g2280 58 SMART madsneu2 1 56 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g2280 Sto-Chr12 19499738 19499914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g2280 1 51 Type I MADS-box Gene Family AT3G05860 45.098 9.30e-13 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto12g2280 SRF-TF 6.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g2280 - K09264 mdm:103406056 64.6994