Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g2220 ATGGAGTCCCTTGGATTTGTGGATGACCTCTTGAATTTCTCATCAGACATAggagaggaagatgatgaggaaGATAAAACCAGGAAAGCCCTTCCTTCACTTAGCCTGAAATGCAGTGATCCAGCATCATTCAATGCTTTGGATGCAGATGATCCAAGCCATTCTTTTTCTGAGTTTGCAGAAGAAGAGCTTGAATGGCTATCCAACAAAGATGCTTTCCCTGCTGTAGAAACATTTGTCGACATGCTCTCTGTTCAACCAAACCTACTGAAGCATGAAACCACTGTCTCAACTCGTGAATATAGTGCAAGCAGTACCAACAGTAATAACAGCACTAACAGTGTTACCCTCTTAGATGGCTATAATCACCTTAAGGTTCCTGTCCGAGCACGGAGCAAGCGTGGAAGTAAGCATCATCGTGGCCCTGCTGATTTCTCCAGTCAGCAATTTTGGTGGAGCCAACTAAGTAACAAAAGTACCAAAGCAGAATCAGTGATAACAATCTCAACAATTGGAAGGAAATGCCAGCACTGTGGAGCTGAGAAAACTCCACAATGGCGGGCAGGGCCCCTTGGGCCAAAAACGCTTTGTAACGCTTGTGGGGTCAGGTATAAGTCTGGGCGGCTTGTACCTGAATACCGTCCTGCAAGTAGCCCTTCTTTTTGCAGTGAGTTGCATTCAAATTCCCACAGGAAGATAATGGAGATGAGGAAGCACAAGCATATTGGAGGTCATGGATAA 741 0.4386 MESLGFVDDLLNFSSDIGEEDDEEDKTRKALPSLSLKCSDPASFNALDADDPSHSFSEFAEEELEWLSNKDAFPAVETFVDMLSVQPNLLKHETTVSTREYSASSTNSNNSTNSVTLLDGYNHLKVPVRARSKRGSKHHRGPADFSSQQFWWSQLSNKSTKAESVITISTIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVPEYRPASSPSFCSELHSNSHRKIMEMRKHKHIGGHG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g2220 246 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355|GO:0043565
Sto12g2220 246 CDD ZnF_GATA 174 221 IPR000679 GO:0006355|GO:0043565
Sto12g2220 246 PANTHER GATA TRANSCRIPTION FACTOR 1 7 240 - -
Sto12g2220 246 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Sto12g2220 246 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 232 - -
Sto12g2220 246 SMART GATA_3 169 219 IPR000679 GO:0006355|GO:0043565
Sto12g2220 246 PANTHER GATA TRANSCRIPTION FACTOR 7 240 - -
Sto12g2220 246 Pfam GATA zinc finger 175 208 IPR000679 GO:0006355|GO:0043565
Sto12g2220 246 Gene3D - 169 220 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g2220 Sto-Chr12 18463073 18464401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g2220 1 243 C2C2-Gata Transcription Factor Family AT3G24050 41.935 6.58e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto12g2220 GATA 8.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g2220 - - gmx:100784527 336.65