Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g2157 ATGCAGCACAATTTTGATTCAATCCGTTTTGTTGATCCATTCCGCCAGAACTGGACAATCAAGGCCCGGGTTGTGAGGATTCAAAATCAGTGCACATGTGAAGAGTACATTCGCAGTGAGTACATGAAAGGATCTTCAAATGAAACGGGATTCAAAATCAGTGCACATGTGAAGAGTACATTCGCAATGAAGTTTAGGAGCCTGCTCAAGGAAGGATCCGTTTACATCATGTCACAGTTCAACGTAGGCTCAAATAGCGGTGGATTTCATGCTGTCAATCATCAATATACACGGGTTGCTGCGACGGAAGACGATGGTGAAATAAATCGGTATGGTTTCTCATTTGTTACTGCACAGGACATTCTATCTGCTAATTTGGAGCAGCAAGTCTTAGTAGATATTATTGGTCGTGTGATAACAATGTCTCTGGTGCATCAATCATCAGAGACCGATGCCAAGTTTAAGCGTCTCACAATCGAGATTGAAGATGAACAGAAAACCAAACTGTCGATTACATTATGGGGAAGGTTTGTTGACCAATTTATGGATTTTGTGAAAAAATATGGGGAGGGTCCAGTTGTGGTTGCCCTCCAACACTTAAAGATCAAAGAGTACAATGGTTCAAGATCATTGTGCAATTCTATGTACGCCTCAAGGATGCTGATCAACTCAGACATTGACGAGGTCCGACAATTTCATGCTGGACTGGATGGAGATGTGTTGTGCATTCTTGCATCTGTCCTGAAAGTTAATTCTGAACGTGGTTGGTTCTATGATTCATGCAAGAGCCAACATCACCATTTTTTTCGTGATGTTTCGATGTTCCTAGCCATTTCTGCTCCTGATTTGCGCAAAGAACATTTTCAGAATGTACATGATCCTGCTGCGATCCTAGATAAGTTTGACACCTTTTTGGGTCGAACCTTTGTCTTCAGAGTTTCTGTTAGGGGGTCGACATGGAACACTTCGCCTTCATACATTGTTCAACGAATGACTTGTGAGCCTAGTATTGTTGAAAAATTCACTGCATTTCAAAAGGCAAAGGACGCGAAGAAAAATGGTGAGTCCATGACAGGATCTTCAAATGAAACGaTTGATCTGACCTCGCACGATGACAATATAAATACTCTTGCGCAACTCAGTGTTTTGTCAAATATTGGCATGGATGGCAGAAGGCTATCTTTTGTAGATGCTGATACTTCTCCCTCCAACACAACAAgcagcacaagtaagagggttTCAGCTGAGCCAAGCACCGGTGATGAAATGGAGCAGGTTGACATGCATTTGAAGAGGGTCAAAGTAGAGAAGAGTTGA 1317 0.4146 MQHNFDSIRFVDPFRQNWTIKARVVRIQNQCTCEEYIRSEYMKGSSNETGFKISAHVKSTFAMKFRSLLKEGSVYIMSQFNVGSNSGGFHAVNHQYTRVAATEDDGEINRYGFSFVTAQDILSANLEQQVLVDIIGRVITMSLVHQSSETDAKFKRLTIEIEDEQKTKLSITLWGRFVDQFMDFVKKYGEGPVVVALQHLKIKEYNGSRSLCNSMYASRMLINSDIDEVRQFHAGLDGDVLCILASVLKVNSERGWFYDSCKSQHHHFFRDVSMFLAISAPDLRKEHFQNVHDPAAILDKFDTFLGRTFVFRVSVRGSTWNTSPSYIVQRMTCEPSIVEKFTAFQKAKDAKKNGESMTGSSNETIDLTSHDDNINTLAQLSVLSNIGMDGRRLSFVDADTSPSNTTSSTSKRVSAEPSTGDEMEQVDMHLKRVKVEKS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g2157 438 SUPERFAMILY Nucleic acid-binding proteins 113 236 IPR012340 -
Sto12g2157 438 MobiDBLite consensus disorder prediction 422 438 - -
Sto12g2157 438 Gene3D - 107 239 IPR012340 -
Sto12g2157 438 MobiDBLite consensus disorder prediction 397 416 - -
Sto12g2157 438 Gene3D - 4 105 IPR012340 -
Sto12g2157 438 CDD RPA1_DBD_B_like 133 232 - -
Sto12g2157 438 SUPERFAMILY Nucleic acid-binding proteins 3 97 IPR012340 -
Sto12g2157 438 PANTHER REPLICATION FACTOR A 1, RFA1 11 234 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto12g2157 438 Pfam Domain of unknown function DUF223 47 98 IPR003871 -
Sto12g2157 438 MobiDBLite consensus disorder prediction 395 438 - -
Sto12g2157 438 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 11 234 - -
Sto12g2157 438 Pfam Replication protein A OB domain 125 220 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g2157 Sto-Chr12 17840499 17846568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g2157 11 239 Core DNA Replication Machinery Family AT5G08020 22.857 2.73e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g2157 - K07466 crb:17879615 115.931