Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g2012 ATGGTGAATACTCACAACAATTTGTCCAAGCAAGGAAGCATTGTTTCTAACGATTCTAATGGTAAAGCCTTTCACTATCACAAGGATCCATTGTATCGGCATCTGTCTGATAATTCAGGCGCACATCTGGGTTCCAAAATTGCTGCTTCCGTGAAGAGTGTATTCGTAAATAAATTCAAGAATAATCTCAAGGAAGGTGCAGTGTACGTCATGTCTGGGTTCAATGTCGTACCATCCTCAAGTTCGTTCCGTTCTACACGACATTCGTACAAGTTGAACTTTCAGTATCAAACTCGGATAGCGCGGGCTGACGACGACGGCTCCATACACCAATTCGGATTTGAATTTGTTCCCGCTGTGAAGATCATATCCGGGGAGTTAGATCAAAACATCTTAGTTGACGTAATTGGTCGTGTTTTCAATATGTCTGAGGTGCATGAGTCGTCTTCCAATGATCCTAACTCAATGCGGGTAACTATCTATATTGAATACTCTGATAAAACGCAGTTGGCGATCACTCTGTGGGGTCGATATGCCAATCAGATTGTCCAATACATGTCAAAAAATTTTGAGAGTGTAATCGTGATGGCATTTCAATTCTGTAAAATTAAAGAGTACAACGGTACACGTTTGTTGTCTAACTCTATGTATGCTACTCGGGTTATTATTAACTCTGACATAGAGGAGATACGACAGTTCCATCGAGGGCTGCAGCTTGAAGATCTTACGAGCCCTATGAACCGCACTAGTCATATCACTATGACAACCACTACTCCTCTAGAGGCCACATTCTCTGGCTATCCACTTTCATCCATTGATGAACTATATTAG 831 0.4164 MVNTHNNLSKQGSIVSNDSNGKAFHYHKDPLYRHLSDNSGAHLGSKIAASVKSVFVNKFKNNLKEGAVYVMSGFNVVPSSSSFRSTRHSYKLNFQYQTRIARADDDGSIHQFGFEFVPAVKIISGELDQNILVDVIGRVFNMSEVHESSSNDPNSMRVTIYIEYSDKTQLAITLWGRYANQIVQYMSKNFESVIVMAFQFCKIKEYNGTRLLSNSMYATRVIINSDIEEIRQFHRGLQLEDLTSPMNRTSHITMTTTTPLEATFSGYPLSSIDELY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g2012 276 CDD RPA1_DBD_B_like 134 233 - -
Sto12g2012 276 SUPERFAMILY Nucleic acid-binding proteins 114 238 IPR012340 -
Sto12g2012 276 PANTHER REPLICATION FACTOR A 1, RFA1 39 275 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto12g2012 276 SUPERFAMILY Nucleic acid-binding proteins 44 111 IPR012340 -
Sto12g2012 276 Gene3D - 108 243 IPR012340 -
Sto12g2012 276 PANTHER BNAC07G49340D PROTEIN 39 275 - -
Sto12g2012 276 CDD RPA1_DBD_A_like 31 100 - -
Sto12g2012 276 Gene3D - 7 106 IPR012340 -
Sto12g2012 276 Pfam Domain of unknown function DUF223 38 132 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g2012 Sto-Chr12 16026875 16032503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g2012 44 253 Core DNA Replication Machinery Family AT5G45400 23.474 1.70e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g2012 - - soe:110779942 129.798