Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g2000 ATGGTTTTATGTGACGCTGAGAATTTTACTATTGGTGCAATTGTACCCAGTATGTACTTGAATAAATTCAAAGGTGCTTTGGTTGAAGGTGGTGTTTATTTTATCTCACGATTTGGAGTTGGTGGTAGTGGAGGGAATTTCCGTATTACCACTCATGCTTTTAAGATCAACTTCCAATTTGGTACACGCGTAATGCCTACTGTTGATGACcctaatattcataaatttggcTTTGACTGGGTGACCGCCGAATCTATTACATTTGGCAATGCGGATGAGAAAACTCTGGTTGATTTCATTGGTTTGCTCACTAACATAGGGGATGTAATTCCGTCATCTAAAGATGACGCCTCCTCCAAAAGAGTTACTATTGAGATAGAAGATAGAGCAAGGTCCAGGGTGAGTGCTACTCTTTGGGGCCGTTACTGTGATCAGATTGAAAAGTTCATGAACAAGCACAAAGAAGGTCCTGTTGTTATTGCTTTGCAATACTGCAAGATAAAAGTTTTTAATGGTCATCGTAGTCTTTCCAATTCCATGCATGCAACGCGTGTACTGATCAACGAGGATATTGAAGATTTTAGGGGATTTCATGATCAAGATTTTGGAACCAATTTGAAGAGTCCTTTGATAGGAAATGAGTCTATTCACTGTATTATTGGTTCTGTGCTCAAGGTTAACACGGATAAACCTTGGTTTTATAATTCTTGCACAAAATGTAAAAGGAAAGTTGAGGAAGATGGTGAAAGCTTCTACTGTAACTACTGTTCAGCTCCGATGTCCACTGTCATCCCGAGGTTTAGAATTGAACTGGTCGTAATTGATGATTCTGCTCCTGCTAATTTCGCTGTATTTGATCGTGATGCAGCAAATTTTTTGGGAGTAACTGCAGAATTCATGAAGAACAAAGCAGAGAAGGTTGATGATGATTCTATGCATTCCTTAGCCGAATTTGACAAGTTTCTTGGTATACGATTTGTTTTCAAGGTCGGGGTGAAATTGGCAACTTGGAGTCCTACTCCTTTGTTAACAGTACAGGCAATGTCTTGGGATCAAGACCTTATTAAGAAGCTATCTGTTGATTCCCCCTTAGATGTTGTCACAACTGAACACTTTGGAGATACGAATATTTCTTCCAGTAACTCCCAAGATGTCACCGTTGTTGACGTTTCTTCTCAGAATTTGACTCCTAATGTACAAGTTGTGAAGAATAATCTTGACAACAAAACAGCGAACCCAAGATATGCTGTTGAAGGTCGTTCTTTGTCCTTTTCTGAAGAAGTGACATCTGACGATCGTGTCACCACTAGCAGCAGCATTAGGAATTCATCTGAAGACTCTAATACTAAAAGGAGAGCCTATGACTTCAACGAAGTCAATACTTTTAGTTTAGATGTTATAAAGAAGGTTAAACTAGAGAAGTTGTAA 1428 0.3859 MVLCDAENFTIGAIVPSMYLNKFKGALVEGGVYFISRFGVGGSGGNFRITTHAFKINFQFGTRVMPTVDDPNIHKFGFDWVTAESITFGNADEKTLVDFIGLLTNIGDVIPSSKDDASSKRVTIEIEDRARSRVSATLWGRYCDQIEKFMNKHKEGPVVIALQYCKIKVFNGHRSLSNSMHATRVLINEDIEDFRGFHDQDFGTNLKSPLIGNESIHCIIGSVLKVNTDKPWFYNSCTKCKRKVEEDGESFYCNYCSAPMSTVIPRFRIELVVIDDSAPANFAVFDRDAANFLGVTAEFMKNKAEKVDDDSMHSLAEFDKFLGIRFVFKVGVKLATWSPTPLLTVQAMSWDQDLIKKLSVDSPLDVVTTEHFGDTNISSSNSQDVTVVDVSSQNLTPNVQVVKNNLDNKTANPRYAVEGRSLSFSEEVTSDDRVTTSSSIRNSSEDSNTKRRAYDFNEVNTFSLDVIKKVKLEKL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g2000 475 SUPERFAMILY Nucleic acid-binding proteins 213 346 IPR012340 -
Sto12g2000 475 SUPERFAMILY Nucleic acid-binding proteins 78 198 IPR012340 -
Sto12g2000 475 CDD RPA1_DBD_C 219 349 IPR013955 -
Sto12g2000 475 Pfam Replication protein A OB domain 90 179 IPR031657 -
Sto12g2000 475 Pfam Domain of unknown function DUF223 1 74 IPR003871 -
Sto12g2000 475 MobiDBLite consensus disorder prediction 428 449 - -
Sto12g2000 475 Gene3D - 191 359 IPR012340 -
Sto12g2000 475 MobiDBLite consensus disorder prediction 428 444 - -
Sto12g2000 475 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 3 336 - -
Sto12g2000 475 SUPERFAMILY Nucleic acid-binding proteins 1 76 IPR012340 -
Sto12g2000 475 CDD RPA1_DBD_B_like 98 197 - -
Sto12g2000 475 Gene3D - 90 190 IPR012340 -
Sto12g2000 475 CDD RPA1_DBD_A_like 1 64 - -
Sto12g2000 475 Pfam Replication factor-A C terminal domain 220 348 IPR013955 -
Sto12g2000 475 Gene3D - 1 69 IPR012340 -
Sto12g2000 475 PANTHER REPLICATION FACTOR A 1, RFA1 3 336 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g2000 Sto-Chr12 15846139 15848204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g2000 3 338 Core DNA Replication Machinery Family AT5G45400 20.745 1.12e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g2000 - - soe:110779942 176.022