Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1992 ATGGAATCGAAAAATCCGCCATTGCCGGAGCTGGACCTCGATAAGATCAGAGTCCTCAAAGTCCTCGGCAAAGGTGCCATGGGCACCGTCTTTCTCGTAAACGACATCGTTTCCACCGATCACTCTGCCCGCAAATCCCCCTTCGCCCTCAAAGTCGTTAAAAAATGCTCCCTCCACGCCAAGCTCGACGCTGACCGACGTGCCCGCTGGGAAATCAACGTCCTCTCTCGCTTGTCCCACCCATTTCTCCCTTTGCTTCTCGGGACCTTCGAGTCCGACCAATTCTTGGGCTGGGCGGTACCTTACTGCCCCGGCGGCGACCTCAACGTTCTTCGATACCGTCAAACCGACCGCGTATTCTCCCCCGCCGTCATTCGCTTCTACTTGGCCGAGATCGTGTGCGCCCTCGACCACCTCCATAGCCTCGGCATCGCGTATCGAGACTTAAAGCCGGAGAATGTCCTCGTTCAACAATCCGGTCACGTGATTCTCACGGACTTCGATCTCTCCCGCGAGCTTAAACATAAATCCATGAGGACTGTAATCACAGCACCAACGACTCCCGCCGTCATCGAGGAAACTCCGCCGCCGGAAAGTCGACGCAAGCATCGCCGGAATTTCACGCGGTGGTTCCCGGTTTCGCCGGAGATGATTTATCAGAGAAAATTAGGTTTGCATAAGGCGAAATCCGCCCGAGTCAACCCGGTGAGTAGACGGAAACAGAGTTTTTTCAATGACGGCGAGCGTTCGAACTCGTTCGTCGGCACGGAGGAGTACGTCTCGCCGGAGGTCGTCCGCGGAGAGGGTCACGAGTTCGCCGTCGACTGGTGGGCCCTCGGGATTCTGACGTATGAGATGTTGTACGGCGTGACGCCGTTCAAGGGGAGGAACCGGAAAGAAACGTTTCGAAACGTTCTAGTGAAGGAGCCGGAGTTCGTGAGGAAGCACGCGGCGTTAACGGACTTGATCCAACGCTTGCTGCAAAAGGACCCCACGAGGCGATTGGGTTTTGCGCGTGGAGCTTGTGAGATCAAGGAGCACGAGTTCTTCAGGGGAGTCCAGTGGGACTTGCTGACGGAGGTTGTACGGCCGCCGTTCATTCCGTCGAGAGAGGAGGCGAACTTGACGAACCGACTCAGAACATCTCAATCTGAATTCTTCACGGGTACAGCAGCATTGCATTCATCCCAGCAACGCTCGGCTTTTCTCCAAATGTCATTGAAGTTATGGACCTCATCTCGAAACTTTGTTCCATTCCTTGCCTCCCAAAGGTAG 1275 0.5537 MESKNPPLPELDLDKIRVLKVLGKGAMGTVFLVNDIVSTDHSARKSPFALKVVKKCSLHAKLDADRRARWEINVLSRLSHPFLPLLLGTFESDQFLGWAVPYCPGGDLNVLRYRQTDRVFSPAVIRFYLAEIVCALDHLHSLGIAYRDLKPENVLVQQSGHVILTDFDLSRELKHKSMRTVITAPTTPAVIEETPPPESRRKHRRNFTRWFPVSPEMIYQRKLGLHKAKSARVNPVSRRKQSFFNDGERSNSFVGTEEYVSPEVVRGEGHEFAVDWWALGILTYEMLYGVTPFKGRNRKETFRNVLVKEPEFVRKHAALTDLIQRLLQKDPTRRLGFARGACEIKEHEFFRGVQWDLLTEVVRPPFIPSREEANLTNRLRTSQSEFFTGTAALHSSQQRSAFLQMSLKLWTSSRNFVPFLASQR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1992 424 SMART serkin_6 16 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1992 424 SUPERFAMILY Protein kinase-like (PK-like) 14 413 IPR011009 -
Sto12g1992 424 Gene3D Transferase(Phosphotransferase) domain 1 247 369 - -
Sto12g1992 424 Gene3D Transferase(Phosphotransferase) domain 1 11 204 - -
Sto12g1992 424 PANTHER FLIPPASE KINASE 1-RELATED 11 376 - -
Sto12g1992 424 Pfam Protein kinase domain 245 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1992 424 Pfam Protein kinase domain 18 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1992 424 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 11 376 - -
Sto12g1992 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Sto12g1992 424 ProSitePatterns Protein kinases ATP-binding region signature. 22 55 IPR017441 GO:0005524
Sto12g1992 424 ProSiteProfiles Protein kinase domain profile. 16 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1992 Sto-Chr12 15741806 15745176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1992 11 376 AGC Kinase Gene Family AT3G20830 63.612 1.20e-156 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Sto12g1992 Pkinase 2.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1992 - K08286 zju:107412708 551.977