Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1986 ATGGGAAGCCATATGAGTTGGGGCATAATAGAGGAAGAGGGTTGGAGGAAGGGTCCTTGGACTTCTGAGGAAGACAGACTTCTCATTCACTATGTGAGGACGCATGGTGAAGGAAGATGGAATTCTGTTGCGAGGCTTTCagGACTGAAAAGAAATGGTAAGAGCTGCAGATTGAGGTGGGTGAATTATTTGAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAGGAAAACATAATTCTAGAGCTGCATGCTAGATGGGGAAACAGGTGGTCTACAATTGCAAGAAGCTTGCCTGGAAGAACAGACAATGAGATAAAGAACTATTGGAGGACCCATttcaagaaaaaggaaaggagtCCCTCCTCTCATCAACAATCTCAATCTCCATCAAGCTTGGAAATGAAAGGGATGATGGCCTTGCTTGAAGAGAACAATTATAATGACCACAAAGTGCCTTCTACTCTATTATGCTCAATGGCTAATCTCTATCCAACCACCTCAGAATCAGAGGAAGGCCACTTCTACTACTACTCAATGCTTAGTAACAATAATGCCTCAAATGAAGAGCTTTGGTGGGATGGACTGTGGAATTTGGATGATGTTCGTGGAGATTTCAGTACAACCACCAAAGCCACTTTGCAAAATTTGGTTGCTCCCTATTGTTAA 672 0.4211 MGSHMSWGIIEEEGWRKGPWTSEEDRLLIHYVRTHGEGRWNSVARLSGLKRNGKSCRLRWVNYLRPDLKRGQITPQEENIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKERSPSSHQQSQSPSSLEMKGMMALLEENNYNDHKVPSTLLCSMANLYPTTSESEEGHFYYYSMLSNNNASNEELWWDGLWNLDDVRGDFSTTTKATLQNLVAPYC 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1986 223 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Sto12g1986 223 Gene3D - 17 69 - -
Sto12g1986 223 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Sto12g1986 223 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 130 210 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sto12g1986 223 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 124 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sto12g1986 223 Gene3D - 74 140 - -
Sto12g1986 223 SMART sant 69 117 IPR001005 -
Sto12g1986 223 SMART sant 16 66 IPR001005 -
Sto12g1986 223 PANTHER MYB TRANSCRIPTION FACTOR 5 124 - -
Sto12g1986 223 PANTHER MYB TRANSCRIPTION FACTOR 130 210 - -
Sto12g1986 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Sto12g1986 223 CDD SANT 19 64 IPR001005 -
Sto12g1986 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
Sto12g1986 223 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Sto12g1986 223 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Sto12g1986 223 CDD SANT 74 115 IPR001005 -
Sto12g1986 223 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1986 Sto-Chr12 15698122 15699870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1986 12 223 MYB Transcription Factor Family AT3G24310 51.538 3.83e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g1986 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1986 K09422 - gmx:100782089 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1986 12 15698122 15699870 Sto12g1986 12 15698122 15699870 ECH