Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1963 ATGCGGAGTTTCACTTTCTTCGAACGAGTATCTCGAGCTTTCCACAACAATTCTTCGCATTTCAAACTCGTAGCACTCTGCACCGTAAGTGGAGGCGGCCTTTTGGCTTATGCTGAGGCTGCTTCATCTGAAGCCGTTAGTGATAAGAAGAAGGTGGTGGTGCTAGGAACCGGATGGGCAGGCACCAGTTTTCTGAAGAATATTAATAATCCGAGGTATGAGGTTCACGTCGTGTCGCCTCGTAATTATTTTGCATTCACTCCTTTGCTGCCTAGCGTTACTTGCGGTACAGTCGAAGCACGCAGCATTGTTGAACCTGTTCGCAATTTTTTCAGAAAGAAAAATTTGGATATTCAATTCAGTGAAGCAGAATGTATAAAGATAGATGCAAAAAACAGGAAAGTTTATTGCCGATCcaatatagaaaataatttgaatGAGAAAGAAGATTTTGTTGTAGACTATGACTACCTTATCATTTCCGTGGGAGCTAATGTCAACACATTCAATACTCCAGGAGTGGTGGAGAATTGCCATTTCTTGAAGGAAGTAGAAGATGCTCAGAAAATCAGAAGAACAGTTATTGACTGCTTTGAGAGAGCAAGTCTTCCGAATGTAAGTGAAGAAGATAAGAAGAGAATTCTTCATTTCGCTATTGTTGGAGGTGGCCCAACCGGAGTGGAGTTTGCAGCATCGCTTCATGACTTTGTCAACGAggatttggttaaattataTCCTGGGATAAAAGATTTTGTTAAAATTACTCTTCTAGAAGCAGGAGATCATATTTTAAGCATGTTTGACAAAAGAATAACTGCGTTTGCTGAAGATAAGTTTCGAAGAGATGGTATAAATGTGAAAACAGGATCCATGGTTGTGAAAGTATCGGAGGAAGACATTTCTactaaagaaatgaaaaatggaGAAGTTACTACAATTCCATATGGAATGGCTGTCTGGTCAACTGGCATTGGCACGCGTCCATTCATTAAAGATTTTATGAAGCAAATTGGTCAGGCTAACAGGCGTGCTCTAGCTACTGATGAATGGTTGAGAGTTGAGGGATGCGACTATGTGTATGCACTTGGCGATTGTGCAACAATAAACCAGAGAAAAGTCATGGAAGATATTGCCGCAATCTTTAAGAAGGCAGATGCAGACAATTCAGGAACACTGACGGTCAAAGAGTTTCAAGAGGTCATTGATGACATCTGTGAAAGATACCCTCAGGTTGAGCTATATTTGAGGAGTAAACAGATGAGCGACATTGCTGATCTTTTAAAGGAAGCCAAGGGAGATGTTGCAAAAGAATCCATTGAACTGAATATTGAAGAAGTCAAGACTGCACTTTCCAAAGTGGATTCTGAAATGAAATTTCTTCCTGCTACTGCGCAGGTTGCATCTCAGCAAGGAGCCTACCTGGCGAAGTGCTTCGACCGGATGGAAGAGTGTGAGAAAAATCCTGAGGGTCCTCTCAGGTTCAGAGGAGAAGGTCGCCATCGGTTCAAACCCTTTAGGTACAAGCATTTTGGTCAATTCGCTCCTCTCGGAGGAGAGCAGGCAGCTGCACAGCTCCCTGGGGATTGGGTATCAATAGGCCACAGCACCCAATGGCTGTGGTATTCTGTATATGCGAGATTTATTGCTGCACCAAAAGGGGATTGTAGTAGACACAGAAATCCTCAAATCTTTGAGGATGTTGACAACCATAGTAATTCGCAAACTGTAGAAGCTGTACTACGATACTCAGCAATGGATTGTTTCTTGGTTTCCCAGGACATTAAGGAGCCTCCAAACATAAATCCATATCTTTGTTGA 1818 0.4131 MRSFTFFERVSRAFHNNSSHFKLVALCTVSGGGLLAYAEAASSEAVSDKKKVVVLGTGWAGTSFLKNINNPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNFFRKKNLDIQFSEAECIKIDAKNRKVYCRSNIENNLNEKEDFVVDYDYLIISVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERASLPNVSEEDKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVKLYPGIKDFVKITLLEAGDHILSMFDKRITAFAEDKFRRDGINVKTGSMVVKVSEEDISTKEMKNGEVTTIPYGMAVWSTGIGTRPFIKDFMKQIGQANRRALATDEWLRVEGCDYVYALGDCATINQRKVMEDIAAIFKKADADNSGTLTVKEFQEVIDDICERYPQVELYLRSKQMSDIADLLKEAKGDVAKESIELNIEEVKTALSKVDSEMKFLPATAQVASQQGAYLAKCFDRMEECEKNPEGPLRFRGEGRHRFKPFRYKHFGQFAPLGGEQAAAQLPGDWVSIGHSTQWLWYSVYARFIAAPKGDCSRHRNPQIFEDVDNHSNSQTVEAVLRYSAMDCFLVSQDIKEPPNINPYLC 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1963 605 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Sto12g1963 605 Gene3D - 416 552 - -
Sto12g1963 605 Gene3D - 42 402 - -
Sto12g1963 605 SMART efh_1 376 404 IPR002048 GO:0005509
Sto12g1963 605 PANTHER NAD(P)H DEHYDROGENASE B2 3 546 - -
Sto12g1963 605 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Sto12g1963 605 SUPERFAMILY FAD/NAD(P)-binding domain 49 268 IPR036188 -
Sto12g1963 605 PRINTS FAD-dependent pyridine nucleotide reductase signature 52 71 - -
Sto12g1963 605 PRINTS FAD-dependent pyridine nucleotide reductase signature 155 173 - -
Sto12g1963 605 PRINTS FAD-dependent pyridine nucleotide reductase signature 216 234 - -
Sto12g1963 605 SUPERFAMILY EF-hand 330 426 IPR011992 -
Sto12g1963 605 SUPERFAMILY FAD/NAD(P)-binding domain 216 369 IPR036188 -
Sto12g1963 605 Coils Coil 436 456 - -
Sto12g1963 605 PANTHER NADH DEHYDROGENASE 3 546 IPR045024 GO:0003954|GO:0006116
Sto12g1963 605 Pfam Pyridine nucleotide-disulphide oxidoreductase 50 374 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1963 Sto-Chr12 15461228 15468565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1963 1 545 Chloroplast and Mitochondria Gene Families AT4G21490 72.101 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1963 K03885 - gmx:100809915 934.865