Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1914 ATGCGAAGTTCATGGGCAGATTTGGCTGCGAATTCCGCAGCTGAAAATGCAGGCCCTGGTTCTTCTGCCAACAATTTTGGAATTGGTAATACATCAGCTCCTTCACGGACAGCCTATGTTCCTCCTCATCTTAGGAACCGTCCACCTGTTGCAGAATCCTCTGTTCCTGTAAGTAGTGGCGCTTCTGCCAGTTCTGGTACTGGTAATGATGGATCACGTTGGGCCGCTCCCAAAAATGACTATCATTCAGGGTATGGTGGCAGTGGCCGCACAAGTGGATGGGGTAACAGAAGTGGTGGCTGGGATCGTGGCAGGGAGCGAGAAGTCAATCCTTTCGGAAATGAGGATGATGCAGAACAGGCTTTTAGTGAGCAGGAGAATACAGGAATAAACTTTGATGCATATGAAGACATACCAGTTGAGACCAGTGGTGAAAATGTGCCACCGCCCGTTAATACATTTGCTGAGATTGATCTTGGGGAAGCACTTAATCAGAATATAAGGAGGTGCAAATATGTTAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTTGCTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCAATTATCAGTGGAATTATGAGGGGGCAACCTGTACAGAGGCCACCTCGCGGGGTGCGTACAGTGTATCCACTTGCCCTCGTTCTCTCACCAACTAGGGAGCTATCAATGCAAATACATGAAGAAGCTAGAAAGTTTTCATACCAAACAGGGGTTAGGGTGGTTGTTGCTTATGGTGGCGCACCGATAAACCAGCAGATGCGGGATCTTGAGAGAGGGGTTGATATTCTTGTAGCAACTCCTGGAAGACTGGTAGATTTGTTGGAGCGGGCTAGGGTTTCACTGCAGATGATAAGATATTTGGCCTTAGATGAGGCAGATCGAATGCTTGATATGGGTTTTGAGCCTCAAATAAGGAAGATTGTGGAACAAATGGACATGCCTCCACCAGGTGTCAGACAGACTATGCTGTTCAGTGCCACTTTCCCAAAAGAGATACAGAGATTGGCGTCtgattttctttcaaattatatttttctggcTGTTGGAAGAGTGGGCTCTAGTACTGATTTAATTATCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCACAAAGGGCAAATGGTGCACAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACTAAAAAAGGAGCTGATTCACTGGAACACTGGTTGTGCCTTAATGGTTTTCCTGCAACTACTATTCATGGGGACAGGACACAGCAGGAAAGAGAACTGGCGTTGAGGTCTTTTAAAAGTGGCAACACGCCTATATTGGTTGCCACTGATGTGGCCGCACGTGGTCTTGACATTCCTCATGTTGCCCATGTGGTCAACTTTGATCTACCGAATGATATTGATGATTATGTTCACCGTATTGGAAGGACAGGCCGAGCAGGCAAGAAAGGTCTAGCTACTGCATTCTTCAATGACAACAATGCATCACTGGCAAGGTCTTTAGCGGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCAAGGTATGCTGCTCGATCATCTTTTGCCGGAGGAAGGAACCGTCGATCAGGAGGCCGGTTTGGTGGCCGTGATTTTCGAAGAGAGGGTTCTTTCAGTAGGGGTGGTTCTGATTATTACAGCACCGGAAAAAGCAGTGGCGGATATGGGGCTTCTGGTGGTGGCTATGGTGGGGGATACGGCCCTGGAGTCACCAGCGCGTGGGactga 1836 0.47 MRSSWADLAANSAAENAGPGSSANNFGIGNTSAPSRTAYVPPHLRNRPPVAESSVPVSSGASASSGTGNDGSRWAAPKNDYHSGYGGSGRTSGWGNRSGGWDRGREREVNPFGNEDDAEQAFSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQMRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIIQRVEYVQESDKRSHLMDLLHAQRANGAQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLADLMQEANQEVPAWLSRYAARSSFAGGRNRRSGGRFGGRDFRREGSFSRGGSDYYSTGKSSGGYGASGGGYGGGYGPGVTSAWD 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1914 611 SMART helicmild6 426 507 IPR001650 -
Sto12g1914 611 Pfam DEAD/DEAH box helicase 176 357 IPR011545 GO:0003676|GO:0005524
Sto12g1914 611 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 51 582 - -
Sto12g1914 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 523 IPR027417 -
Sto12g1914 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 546 IPR001650 -
Sto12g1914 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 368 IPR014001 -
Sto12g1914 611 MobiDBLite consensus disorder prediction 552 571 - -
Sto12g1914 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Sto12g1914 611 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 51 582 - -
Sto12g1914 611 MobiDBLite consensus disorder prediction 1 37 - -
Sto12g1914 611 Gene3D - 371 550 IPR027417 -
Sto12g1914 611 Gene3D - 108 370 IPR027417 -
Sto12g1914 611 CDD DEADc_DDX3_DDX4 153 374 IPR044763 GO:0003724|GO:0005524
Sto12g1914 611 CDD SF2_C_DEAD 380 516 - -
Sto12g1914 611 Pfam Helicase conserved C-terminal domain 392 507 IPR001650 -
Sto12g1914 611 SMART ultradead3 171 383 IPR014001 -
Sto12g1914 611 MobiDBLite consensus disorder prediction 1 113 - -
Sto12g1914 611 MobiDBLite consensus disorder prediction 52 72 - -
Sto12g1914 611 MobiDBLite consensus disorder prediction 584 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1914 Sto-Chr12 14951813 14974192 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1914 150 539 Eukaryotic Initiation Factors Gene Family AT3G19760 31.969 4.38e-63 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1914 K11594 - gmx:100795756 984.556