Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1912 ATGCGAAGTTCATGGGCAGATTTGGCTGCGAATTCTGCAGCTGAAAATGCAGGCCCTGGTTCATCTGCCAACAATTCTGGAATTGGTAATACATCAGCTCCTCGGGCAGCCTATGTTCCTCCTCATCTTAGGAACCGTCCACCTGTTGCAGAATCCTCTGTTCCTGTAAGTAGTGGCCCTTCTGCCAGTTCTGGTACTGGTAATGCGGGATCACGTTGGGCCGCTCccaaaaatgactatcaatcAGGGTATGGTGGCAGTGGCCGCACAAGTGGATGGGGTAACAGAAGTGGTGGCTGGGATCGTGGCAGGGAGCGAGAAGTCAATCCTTTCGGAGATGAGGATGATGCAGAGCAGGCTTTTAGTGAGCAGGAGAATACAGGAATAAACTTTGATGCATATGAAGACATACCAGTTGAGACCAGTGGTGAAAATGTGCCACCGCCCGTGAATACATTTGCTGAGATTGATCTTGGGGAAGCACTTAATCAGAATATAAGGAGGTGCAAATATGTTAAGCCAACACCTGTTCAGAGGCATGCCATACCGATATCCCTTGCTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCAATTATCAGTGGAATTATGAGGGGGCAACCTGTACAGAGACCACCTCGCGGGGTGCGTACAGTGTATCCACTTGCCCTCGTTCTCTCTCCTACTAGGGAGCTATCAATGCAAATACATGAAGAAGCTAGAAAGTTTTCTTACCAAACAGGGGTTAGGGTGGTTGTTGCTTATGGTGGGGCACCAATAAACCTGCAGTGGGTTTTGCTCTGTGTTTTTGTTTCTCTTCAGATTTTGAAAGTCATGCGGGATCTTGAGAGAGGGGTTGATATTCTTGTAGCAACTCCTGGAAGACTGGTAGATTTGTTGGAGCGGGCTAGGGTTTCACTGCAGATGATAAGATATTTGGCCTTAGATGAGGCAGATCGAATGCTTGATATGGGTTTTGAGCCTCAAATAAGGAAGATTGTGGAACAAATGGACATGCCTCCACCAGGTGTCAGGCAGACTATGCTCTTCAGTGCCACTTTCCCAAAAGAGATACAGAGATTGGCCTctgattttctttcaaaatatatttttctggCCGTTGGAAGAGTGGGCTCTAGTACTGATTTAATTATCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCACAAAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACTAAAAAAGGAGCTGATTCACTGGAACACTGGTTGTGCCTTAATGGCTTTCCTGCAACTACTATTCATGGGGACAGGACACAACAGGAAAGAGAACTGGCGTTGAGGTCTTTTAAAAGTGGCAACACACCTATATTGGTTGCCACTGATGTGGCGGCACGTGGTCTTGATATTCCACATGTTGCTCATGTGGTCAACTTTGATCTACCGAATGATATTGATGATTATGTTCACCGTATTGGAAGGACAGGCCGAGCAGGCAAGAAAGGTCTGGCTACTGCATTCTTCAATGACAACAATGCATCACTGGCAAGGGCTTTAGCCGAGCTGATGCAAGAAGCAAATCAGGAAGTACCTGCTTGGCTCTCAAGGTATGCTGCTCGATCTTCTTTTGCGGGAGGGAAGAACCGTCGATCAGGAGGCCGGTTTGGTGGCCGTGATTTTCGAAGAGAGGGTTCTTTCAGTAGGGGTGGTTCTGATTATTACAGCGCAGGAAGAAGCAGTGGTGGATATGGGGCTTCTGGTAGTGGCTATGCTGGGGGATACGGTCCTGGAGTCACCAGCGCGTGGGAttga 1878 0.4665 MRSSWADLAANSAAENAGPGSSANNSGIGNTSAPRAAYVPPHLRNRPPVAESSVPVSSGPSASSGTGNAGSRWAAPKNDYQSGYGGSGRTSGWGNRSGGWDRGREREVNPFGDEDDAEQAFSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINLQWVLLCVFVSLQILKVMRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSKYIFLAVGRVGSSTDLIIQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALAELMQEANQEVPAWLSRYAARSSFAGGKNRRSGGRFGGRDFRREGSFSRGGSDYYSAGRSSGGYGASGSGYAGGYGPGVTSAWD 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1912 625 MobiDBLite consensus disorder prediction 602 625 - -
Sto12g1912 625 CDD SF2_C_DEAD 394 530 - -
Sto12g1912 625 MobiDBLite consensus disorder prediction 51 71 - -
Sto12g1912 625 Gene3D - 107 384 IPR027417 -
Sto12g1912 625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 382 IPR014001 -
Sto12g1912 625 SMART helicmild6 440 521 IPR001650 -
Sto12g1912 625 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 41 593 - -
Sto12g1912 625 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Sto12g1912 625 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 560 IPR001650 -
Sto12g1912 625 MobiDBLite consensus disorder prediction 566 585 - -
Sto12g1912 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 539 IPR027417 -
Sto12g1912 625 MobiDBLite consensus disorder prediction 1 32 - -
Sto12g1912 625 Pfam Helicase conserved C-terminal domain 406 521 IPR001650 -
Sto12g1912 625 Gene3D - 385 564 IPR027417 -
Sto12g1912 625 SMART ultradead3 170 397 IPR014001 -
Sto12g1912 625 CDD DEADc_DDX3_DDX4 152 388 IPR044763 GO:0003724|GO:0005524
Sto12g1912 625 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 41 593 - -
Sto12g1912 625 Pfam DEAD/DEAH box helicase 175 371 IPR011545 GO:0003676|GO:0005524
Sto12g1912 625 MobiDBLite consensus disorder prediction 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1912 Sto-Chr12 14919012 14929777 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1912 149 553 Eukaryotic Initiation Factors Gene Family AT3G19760 31.034 7.40e-59 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1912 K11594 - gmx:100795756 956.051