Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1881 ATGTCAGCTGCTAATGTATCGTGCCAAGCACTCCAATCATCGGATGGTTCAATTGATGTGATGGGATCCGCGTCCTCAATAGGTGTGTCTTCGAAGATCGCTTGGTTTGCCACCGGATCTAATGCATTGTCTTGCCATCGTCCCTTTCTATTGCTTCCTTTAACACCTGTCCATCAGCAGCAGATCTCTCCCAACCCGACAACACCCGGTACTCTAGTCCTTATATGCGTTCCATCAATCACACCAAGGCGGATCCCTATACCACTCAAGAACATAATGGATGTTATATTTCAGTTGGAAAACAAAGGCCCTAAGCCGGGCTCGTCTCGCATAGGAATCATAGTCTCCGGCGAGGTGCCGGAAGAGCCGGTGGTGTCGACGAAGTCCGGGTTGCTCTTTGAGAGGCGTTTAATTGAGAGGCACATTTCGGATTATGGAAAGTGCCCAGTTACAGGAGAACCACTTACATTGGATGACATTGTTCCAATCAAAACAGGCAAGATAGTGAAGCCCAGACCTGCGCAGGCAGCAAGTATCCCGGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGACTTATGTTATCTAATTTTGCATTGGAGCAACAATTACACACAGCAAGGCAAGAGCTAAGTCATGCTTTATATCAGCATGATGCTGCTTGCCGAGTGATTGCAAGACTTAAGAAGGAAAGAGATGAAGCAAGATCAATACTTGCACAAGCTGAAAGGCAGTTCCCTGTTTCTACACCAAATGCAACAATGAATGCTGCTCTGAGTAATGGGAAAAGAGCTGCTGAGGATGAGGAACTGGCCTCTGGTGGGAAGAAAATACATGCAGGAATAACTTCTACCATTATTTCGGAGCTTACTGAGTGTAATGCATCCCTCTCACAGCAGAGGAAGAAGCGGCAGATTCCTGCAACTTTGGCTCCTGTTGAGGCTCTAGAGGGATATACTCAGATATCTAGTCATCCCTTTCACAAAACAAACAAACCAGGCATTGTATCTATGGATATCCTGTATTCCAAGGACCTCATTGCAACTGGAGGGATTGATACTAATGCTGTGATTTTTGACCGGCCATCGGGACAGATATTATCCACACTCAGTGGTCACTCGAAGAAGGTTACAAGTGTAAAGTTTGTAGGTCAGGGTGATCAGTTCTTAACTGGTTCAGCAGATAAGACTGTACGTTTGTGGCAAGGATCAGATGACGGTAACTATATCTGCAAACATGTATTGAAGGATCATACGGCTGAGTCTGAGATCCTACATACTGTTTTAAGGCTGGTAGATTTGAAAGATAGGATTGGACAGGATTTTAGATATGAAATGGGATATGTTTTATCACggcatgtttggtactCACTTTGGAGAGGGAAGTGTGTCAGAGGGAACAAAACTTCCTTCTCTCTTCATGTTTGGTACAAAGAAGGGAAAGGAAATGGTTCAGAGTTTCCCTGTGCACAAGGAACTTCACTTCCCTGTCATCATAGAGGGAAGAGGAACCAGGTTAGGTGGGAAGTCAAGGTGCAAGCCGTCACTGTCCATGCTACCAATAACTACTTTGTGACTGCTTCACTAGACAGCACTTGGTGCTTTTATGAACTTTCTTCAGGAACATGTCTGACTCAGGTTTCAGACTCTTCTGGATCTTCTGAGGGCTATACTTCTGCAGCTTTTCATCCTGATGGTCTCATTCTTGGAACTGGCACTGCAGAATCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCTAATGTTGCTCGATTTGATGGACACGTTGGGCATGTGACAGCCATTTCCTTTTCTGAGAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGTGTAAAACTTTGGGATCTACGTAAATTGAAAAACTTCAGGACTTTCTCTCCATATGACCCCGACACTCCAACAAACTCGGTGGAATTCGATCATAGTGGATCCTACCTTGCAGTTGCAGGGTCTGATATAAGGATCTACCAAGTTGCAAATGTGAAATCTGAATGGAACTGTATTAAAACATTCCCTGATTTATCTGGAACAGGGAAAGCCACCTGCGTCAAATTTGGTCCAGATGCAAAATATATAGCGGTTGGATCAATGGACCGTAATCTTCGAATATTTGGCCTGCCCAGCGAAGATGGTCCGACTGATCtcttggagcttcaggtaccgTGGGATGAGTTTGTGGACTTACAGAATTCTACAGCAGCATTACTTTCTTTGCCCTGTCCGCTAATGGAAAGGACTTAA 2265 0.4397 MSAANVSCQALQSSDGSIDVMGSASSIGVSSKIAWFATGSNALSCHRPFLLLPLTPVHQQQISPNPTTPGTLVLICVPSITPRRIPIPLKNIMDVIFQLENKGPKPGSSRIGIIVSGEVPEEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTLDDIVPIKTGKIVKPRPAQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSILAQAERQFPVSTPNATMNAALSNGKRAAEDEELASGGKKIHAGITSTIISELTECNASLSQQRKKRQIPATLAPVEALEGYTQISSHPFHKTNKPGIVSMDILYSKDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVGQGDQFLTGSADKTVRLWQGSDDGNYICKHVLKDHTAESEILHTVLRLVDLKDRIGQDFRYEMGYVLSRHVWYSLWRGKCVRGNKTSFSLHVWYKEGKGNGSEFPCAQGTSLPCHHRGKRNQVRWEVKVQAVTVHATNNYFVTASLDSTWCFYELSSGTCLTQVSDSSGSSEGYTSAAFHPDGLILGTGTAESLVKIWDVKSQANVARFDGHVGHVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDPDTPTNSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRIFGLPSEDGPTDLLELQVPWDEFVDLQNSTAALLSLPCPLMERT 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1881 754 PANTHER PRE-MRNA-PROCESSING FACTOR 19 115 425 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Sto12g1881 754 PANTHER PRE-MRNA-PROCESSING FACTOR 19 511 719 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Sto12g1881 754 ProSiteProfiles U-box domain profile. 116 180 IPR003613 GO:0004842|GO:0016567
Sto12g1881 754 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 632 IPR001680 GO:0005515
Sto12g1881 754 ProSiteProfiles Trp-Asp (WD) repeats profile. 550 591 IPR001680 GO:0005515
Sto12g1881 754 Gene3D - 497 714 IPR015943 GO:0005515
Sto12g1881 754 Gene3D - 310 427 IPR015943 GO:0005515
Sto12g1881 754 CDD WD40 334 712 - -
Sto12g1881 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 170 IPR013083 -
Sto12g1881 754 SUPERFAMILY RING/U-box 115 163 - -
Sto12g1881 754 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 402 IPR001680 GO:0005515
Sto12g1881 754 CDD RING-Ubox_PRP19 115 164 - -
Sto12g1881 754 SMART WD40_4 540 582 IPR001680 GO:0005515
Sto12g1881 754 SMART WD40_4 363 402 IPR001680 GO:0005515
Sto12g1881 754 SMART WD40_4 318 360 IPR001680 GO:0005515
Sto12g1881 754 SMART WD40_4 626 665 IPR001680 GO:0005515
Sto12g1881 754 SMART WD40_4 672 713 IPR001680 GO:0005515
Sto12g1881 754 SMART WD40_4 585 623 IPR001680 GO:0005515
Sto12g1881 754 SMART WD40_4 488 537 IPR001680 GO:0005515
Sto12g1881 754 Pfam Prp19/Pso4-like 176 241 IPR013915 -
Sto12g1881 754 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 550 585 - -
Sto12g1881 754 SMART Ubox_2 109 176 IPR003613 GO:0004842|GO:0016567
Sto12g1881 754 Pfam WD domain, G-beta repeat 364 401 IPR001680 GO:0005515
Sto12g1881 754 Pfam WD domain, G-beta repeat 673 712 IPR001680 GO:0005515
Sto12g1881 754 Pfam WD domain, G-beta repeat 589 623 IPR001680 GO:0005515
Sto12g1881 754 SUPERFAMILY WD40 repeat-like 332 712 IPR036322 GO:0005515
Sto12g1881 754 Coils Coil 225 245 - -
Sto12g1881 754 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 370 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1881 Sto-Chr12 14664688 14679394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1881 115 722 U-box Gene Family AT1G04510 52.053 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1881 K10599 - jre:109019525 654.055