Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1793 ATGGGGCAAGGGCAATCCAAGGGCGAGCTGCTTTACCAGCAAGTCAGTTATGGAAACATCGAAGGAATTAAAACCCTTCGTAGGGATGGTGCAGGCCTAGAGTGGATGGACAGAGAAGGAAAGACACCTTTGATTGTTGCTTGTATGAATCCTGAACTCTATGATGTGGCTAAAACTTTGATAGAACTTGGTGCCAATGTCAATGCATATCGACCAGGTCGACATGCTGGTACTCCATTACACCATGCCTCTAAAAGAGGCCTTGAAAGAATTGTGAAGTTACTTCTTTCCCATGGGGCCAATTCATTGGTCTTGAACGATGATTGCCAAACTGCTCTTGATGTTGCTAGGGCCAAAGGCCACAGCAATGTTGTCCGTGCTATTGAGAGTCATCTTTGTTTGTTCTCTGGCTGGTTGCGTGAGTTTCATGGTCCTGGATTCCTAGAAGTTGTAGCTCCTCAGTTGGTATCTAGGAAAGTTTGGGTGGTCGTTTTACCAGTGGGCTCTCGTAATCTTACCAGACCCTACAAGCTGGAGCTTGCCATATATTATGGTTTGCAGGATGCACAACCACGTACAGTTATTGCACTATGGAAGGCCAACTTGGAAGAACCGAAGCTACACCAATCAGATCCGTCAGTGACTATTGTTGATACCAGTAGCAAAACACGCATTAAACTTGCACCTGCAAGTGAGAATGACAAGCAACAACTTAAATGGTTTTCTGATGCGTGTAAAGGAATTCCACAGGCAAATCCAGCATTTTTGCACCATGGCGTTGGAACAGCTCCTCCCACAGCACCACAAGCTGCAGAAGATCTAGCGCTGGCGACCGCTATCAGAGCTTCCATTGAGTCTGCCATTCAGGAGAGGCCACCTCTTACTGATGCCCATCCAAACTTTGAAGCGAGTTCTTCCAGCGGAACGAATACAAGCAAGCATGGGTCAGTTGGTGCTCCAAATCCAAAGACTAGTGGTAGTTTGCCTGTACATGAAGGTGTACCAGGTTTGAGTTTGATTCCATCAGCTCCTCCTATTGCAGATGAGACTCCAGTAGATGGTCCCGTTCATTATCCATCAATTGATTTAAGCCCCATCGATATATCATCTCCGTCCGTCGAAAAGTCacctgaagaagaaaaaaatgctgTTGGGAGTGGTGGTTCATCATCTTGTGTGATTTGTTTAGATGCTCCGGCCGAGGGAGCATGCATACCCTGCGGCCATGTCGCCGGATGCATGTCTTGCTTAAACGAGGTGAAAGCGAAGAAATGGGGTTGCCCTGTGTGTCGAGCCAAGATTGACCAGGTTATCAAGATATATCATGTCTGA 1332 0.461 MGQGQSKGELLYQQVSYGNIEGIKTLRRDGAGLEWMDREGKTPLIVACMNPELYDVAKTLIELGANVNAYRPGRHAGTPLHHASKRGLERIVKLLLSHGANSLVLNDDCQTALDVARAKGHSNVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLVSRKVWVVVLPVGSRNLTRPYKLELAIYYGLQDAQPRTVIALWKANLEEPKLHQSDPSVTIVDTSSKTRIKLAPASENDKQQLKWFSDACKGIPQANPAFLHHGVGTAPPTAPQAAEDLALATAIRASIESAIQERPPLTDAHPNFEASSSSGTNTSKHGSVGAPNPKTSGSLPVHEGVPGLSLIPSAPPIADETPVDGPVHYPSIDLSPIDISSPSVEKSPEEEKNAVGSGGSSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKAKKWGCPVCRAKIDQVIKIYHV 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1793 443 Gene3D - 79 132 IPR036770 -
Sto12g1793 443 ProSiteProfiles Zinc finger RING-type profile. 392 431 IPR001841 -
Sto12g1793 443 SUPERFAMILY Ankyrin repeat 10 133 IPR036770 -
Sto12g1793 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 442 IPR013083 -
Sto12g1793 443 SMART ANK_2a 39 69 IPR002110 GO:0005515
Sto12g1793 443 SMART ANK_2a 108 137 IPR002110 GO:0005515
Sto12g1793 443 SMART ANK_2a 75 104 IPR002110 GO:0005515
Sto12g1793 443 MobiDBLite consensus disorder prediction 299 323 - -
Sto12g1793 443 SUPERFAMILY RING/U-box 391 437 - -
Sto12g1793 443 SMART ring_2 392 430 IPR001841 -
Sto12g1793 443 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Sto12g1793 443 MobiDBLite consensus disorder prediction 291 383 - -
Sto12g1793 443 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Sto12g1793 443 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 443 - -
Sto12g1793 443 PANTHER ROLLING PEBBLES, ISOFORM B 1 443 - -
Sto12g1793 443 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Sto12g1793 443 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Sto12g1793 443 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Sto12g1793 443 Gene3D - 3 78 IPR036770 -
Sto12g1793 443 Pfam Zinc finger, C3HC4 type (RING finger) 390 437 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1793 386 440 C3H Transcription Factor Family AT3G06140 34.545 5.17e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1793 - - lang:109354249 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1793 12 13614096 13619281 Sto12g1793 12 13614096 13619281 ECH