Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto12g1787 | TTGAGCTTCGTCTTCGGCGATTTCCTTACGATTGTTTCAGATGGAATGGCAGATCTTGTTAGCTATGGGAATCCTGAGCGTGATATTGAGCAAGCACTTATTGCTTTGAAAAAAGGAACTCAATTACTCAAGTATAATCGGAAAGGGAAGCCAAAATTTCGCCCATTTAGACTCTCATCAGATGCATCGACACTGATATGGATTTCTCATGGACGGGAAAAGAATCTAAAGTTGTCTACTGTTTCACGTATCATCCCTGGACAGAGAACTGCTGTCTTTAGAAGGCACTTGCGCCCAGAAAAGGATTATCTATCATTTTCACTTATTTATAAAAACGGGGAACGATCACTTGACCTGATTTGCAAGGACAAAGCTGAGGTAGAGATATGGTTTGGAGGCCTTAAGGCATTAATTTCTCCACGTACTCTGCGAACTAGAAGTAACTTGTCTGATGATGTTGTTGACTTTTTTCCAAATAGTCGTCCTTTTGCTGCAACCTTAGAGTTTACTTCAAGCATTACCCGTGGCAGGGATTCTGTTGATTCTGGATCTCGTGAATCTCCATTGTCTTGGGTACCTTCAGATGTGGCGTCAGAACGTGCAAGTATGCAACTAAGGGCTGGTGCTTCAGATGGCTTTCGCGTCAGTGTGTCCAGTACACCTAGCTGTTCTAGTGGAGGATCTGGACCAGATGACATAGAATCACTAGGTGATGTTTATATATGGGGAGAGGTTTGGACAGATGGGATTTCACTTGATGGGTCGGGGAGTCAGATCCCTTCAGTGACAGATGTGTTGGTTCCTAAGCCATTAGAGTCTAATGTTGTTCTTGATGTTCAGCAGATTGCATCTGGTGTTCGCCATATTACTCTTGTTACAAGGCAAGGAGAGGTTTTTTCTTGGGGAGAGGAATGTGGGGGAAGACTTGGTCATGGGATAGACAAAGATTTTTATCAGCCCCATCTTATTGAGTTCCTGGCTGTTCACAATGTTGAATTCGTTGCATGTGGGGAGTATCATTCATGTGCTGTTACTACATCAGGTGATTTATTCACTTGGGGAGATGGTGCGCATAATGCTGGGCTTCTTGGCCACGGCACTAATGTTAGTCACTGGATACCAAAGAGGGTCACTGGCCCTTTAGAAGGGCTTCAAGttttatctgttgcatgtggCACATGGCATTCAGCATTGGCAACCTCCAATGGAAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTCTTAGGTCATGGAGATCGTAAGAGTGTGTCTTATCCAAAAGAGGTGCAATCATTGAGTGGACTAAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCTATTGTAGAGGTCATGTGTCAACAAGGTTCAAATGTTTCATCCTGGAAGCTCTTCACTTGGGGTGATGGTGACAAATATCGTTTGGGTCATGGAAATAAGGAAAGTTACCTTCAACCGAACTGTGTCTCTGCACTTATTGAATATAATTTCCACCAGATAGCTTGTGGACACACAATGACTGTTGCCCTCACTACATCAGGTCATGTATTTACCATGGGAGGCACTGCATATGGTCAACTAGGAAATCCTTTGTCTGATGGAAGAGCACCCATCCTAGTTCAAGATAAGTTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGAGCGAATCATGTTGCTGTCTTGACATCAAGAAGTGAACTGTATACTTGGGGGAGAGGAGCAAATGGAAGATTGGGACATGGAGACATAGAAGACCGAAAAGCTCCAACATTGGTAGAGGGTTTGAAAGATAGACATGTAAAAAATATCTCATGTGGCTCAAACTTTACATCTTGTATATGCATCCATAAATGGGTCTCTGGAGCTGATCAATCTATTTGCTCAGGTTGTCGGCAAGCATTTGGTTTTACTAGGAAAAGGCATAATTGTTATAATTGTGGGTTAGTGCATTGTCATGCTTGTAGTTCCAAGAAAGCATTAAGAGCAGCATTGGCTCCAACACCAGGAAAACCGCATCGTGTATGTGATGCTTGTTATATTAAACTTAAAGCTACTGAATCTACTAGTAGTTCAACTTTTAATAGAAAGGTTACACCTCCTCGTCAATCCCTAGATCGAAATGAAAGATTAGACCGGGGAGAGGTAAGGTCTTCAAGAATTCTCATGTCTTCCATGACTGACCCAGTAAAATTCCTTGAGATATGGGGTAATAAGCCTGAATCTAAACATGATTTTTCTTCCTTAGTCCGAACTTCTCCATCAGTTTCACAATTCAAAGATGCAGCATTTCCAAGTTCATTGAAGCCCGTTCACAATGCTTTCAAGTCATCAAGTCCACCACGAACTCCACCTGCCAGTTCAAGACCTGCATCACCATATGCAAGAAGACCAAGCCCACCACGTACTGCCACCCCTGGATTTTCTAGAAGCATTATTGACAGCTTAAGAAAGACAAATGAGCTTCTGAACCAAGAAGTCTCAAAATTGCAGGACCAAATTCGAAGTTTAAAGAAGAAGAGTGACACACAAGGTTCAGAGATTACGAAGCTACAGAAAAATGTTAAGGAAGCTACTTCATTGGCTGGAGAGGAATATTCTAAGCATAGAGTAGCAAGGGAATTTATTAAATCAATGACAGACCAGttGAAAGATGTGACCCAGAATTTACCACCAGACCTTCCAGACAATGAGGCCTTGAAAACCATGCATACTCAAGCTGAAGATTTTCTAAATGAAAATCCAGAATCTGAAGCACCTTCCATACTATCAAGCTTAGAGTCTAACCAAGTTAATACACTTGATATAACTGCTGACAGTGACTGTTCTAAACTGCAAGAaaatagaatggaagaaactgCTGATGCTACTGAAGTTGAACCGTCTCAAGATGGAGGAAATTCTACTCAAGAAAGTAACAAATCAGCTGAATCTAGTGGAGAGGCAGCAGTTCCTCCACAAAGCTCAGAAAATGGTTCACAATCACCGGAGGACTCTACGAGAcctgggagagagagagaatcacAAGTGATCGAACAATTTGAGCCTGGAGTCTATGTGACACTAATAGTACGGCCAAATGGTAGCAAAGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTTGATGAGCATCAGGCAGAAGAATGGTGGAACAAAAACAAAGATAGAGTGTTTAGAAAATATAGTCCAACAGCTGCAAATAATGCAGCTACTGTGCCATCTAGCTCTCAACCTGTAGCTGAAGAAGTTGAGGCACCACAATCATGA | 3279 | 0.4129 | LSFVFGDFLTIVSDGMADLVSYGNPERDIEQALIALKKGTQLLKYNRKGKPKFRPFRLSSDASTLIWISHGREKNLKLSTVSRIIPGQRTAVFRRHLRPEKDYLSFSLIYKNGERSLDLICKDKAEVEIWFGGLKALISPRTLRTRSNLSDDVVDFFPNSRPFAATLEFTSSITRGRDSVDSGSRESPLSWVPSDVASERASMQLRAGASDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGEVWTDGISLDGSGSQIPSVTDVLVPKPLESNVVLDVQQIASGVRHITLVTRQGEVFSWGEECGGRLGHGIDKDFYQPHLIEFLAVHNVEFVACGEYHSCAVTTSGDLFTWGDGAHNAGLLGHGTNVSHWIPKRVTGPLEGLQVLSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDRKSVSYPKEVQSLSGLKTIKVACGVWHTAAIVEVMCQQGSNVSSWKLFTWGDGDKYRLGHGNKESYLQPNCVSALIEYNFHQIACGHTMTVALTTSGHVFTMGGTAYGQLGNPLSDGRAPILVQDKLVGEFVEEISCGANHVAVLTSRSELYTWGRGANGRLGHGDIEDRKAPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGADQSICSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYIKLKATESTSSSTFNRKVTPPRQSLDRNERLDRGEVRSSRILMSSMTDPVKFLEIWGNKPESKHDFSSLVRTSPSVSQFKDAAFPSSLKPVHNAFKSSSPPRTPPASSRPASPYARRPSPPRTATPGFSRSIIDSLRKTNELLNQEVSKLQDQIRSLKKKSDTQGSEITKLQKNVKEATSLAGEEYSKHRVAREFIKSMTDQLKDVTQNLPPDLPDNEALKTMHTQAEDFLNENPESEAPSILSSLESNQVNTLDITADSDCSKLQENRMEETADATEVEPSQDGGNSTQESNKSAESSGEAAVPPQSSENGSQSPEDSTRPGRERESQVIEQFEPGVYVTLIVRPNGSKVFKRVRFSKRRFDEHQAEEWWNKNKDRVFRKYSPTAANNAATVPSSSQPVAEEVEAPQS | 1092 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto12g1787 | 1092 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 517 | 568 | IPR000408 | - | |
| Sto12g1787 | 1092 | Pfam | FYVE zinc finger | 621 | 686 | IPR000306 | GO:0046872 | |
| Sto12g1787 | 1092 | Coils | Coil | 816 | 843 | - | - | |
| Sto12g1787 | 1092 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 348 | 402 | IPR000408 | - | |
| Sto12g1787 | 1092 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1011 | 1065 | IPR013591 | - | |
| Sto12g1787 | 1092 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 634 | 694 | IPR013083 | - | |
| Sto12g1787 | 1092 | Gene3D | - | 360 | 464 | IPR009091 | - | |
| Sto12g1787 | 1092 | Gene3D | - | 204 | 359 | IPR009091 | - | |
| Sto12g1787 | 1092 | MobiDBLite | consensus disorder prediction | 952 | 1021 | - | - | |
| Sto12g1787 | 1092 | CDD | PH_PLC_plant-like | 27 | 139 | - | - |
Showing 1 to 10 of 44 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto12g1787 | - | - | jre:108981462 | 1454.11 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Sto12g1787 | 12 | 13553311 | 13562811 | Sto12g1787 | 12 | 13553311 | 13562811 | ECH |
Showing 1 to 1 of 1 entries