Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1787 TTGAGCTTCGTCTTCGGCGATTTCCTTACGATTGTTTCAGATGGAATGGCAGATCTTGTTAGCTATGGGAATCCTGAGCGTGATATTGAGCAAGCACTTATTGCTTTGAAAAAAGGAACTCAATTACTCAAGTATAATCGGAAAGGGAAGCCAAAATTTCGCCCATTTAGACTCTCATCAGATGCATCGACACTGATATGGATTTCTCATGGACGGGAAAAGAATCTAAAGTTGTCTACTGTTTCACGTATCATCCCTGGACAGAGAACTGCTGTCTTTAGAAGGCACTTGCGCCCAGAAAAGGATTATCTATCATTTTCACTTATTTATAAAAACGGGGAACGATCACTTGACCTGATTTGCAAGGACAAAGCTGAGGTAGAGATATGGTTTGGAGGCCTTAAGGCATTAATTTCTCCACGTACTCTGCGAACTAGAAGTAACTTGTCTGATGATGTTGTTGACTTTTTTCCAAATAGTCGTCCTTTTGCTGCAACCTTAGAGTTTACTTCAAGCATTACCCGTGGCAGGGATTCTGTTGATTCTGGATCTCGTGAATCTCCATTGTCTTGGGTACCTTCAGATGTGGCGTCAGAACGTGCAAGTATGCAACTAAGGGCTGGTGCTTCAGATGGCTTTCGCGTCAGTGTGTCCAGTACACCTAGCTGTTCTAGTGGAGGATCTGGACCAGATGACATAGAATCACTAGGTGATGTTTATATATGGGGAGAGGTTTGGACAGATGGGATTTCACTTGATGGGTCGGGGAGTCAGATCCCTTCAGTGACAGATGTGTTGGTTCCTAAGCCATTAGAGTCTAATGTTGTTCTTGATGTTCAGCAGATTGCATCTGGTGTTCGCCATATTACTCTTGTTACAAGGCAAGGAGAGGTTTTTTCTTGGGGAGAGGAATGTGGGGGAAGACTTGGTCATGGGATAGACAAAGATTTTTATCAGCCCCATCTTATTGAGTTCCTGGCTGTTCACAATGTTGAATTCGTTGCATGTGGGGAGTATCATTCATGTGCTGTTACTACATCAGGTGATTTATTCACTTGGGGAGATGGTGCGCATAATGCTGGGCTTCTTGGCCACGGCACTAATGTTAGTCACTGGATACCAAAGAGGGTCACTGGCCCTTTAGAAGGGCTTCAAGttttatctgttgcatgtggCACATGGCATTCAGCATTGGCAACCTCCAATGGAAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTCTTAGGTCATGGAGATCGTAAGAGTGTGTCTTATCCAAAAGAGGTGCAATCATTGAGTGGACTAAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCTATTGTAGAGGTCATGTGTCAACAAGGTTCAAATGTTTCATCCTGGAAGCTCTTCACTTGGGGTGATGGTGACAAATATCGTTTGGGTCATGGAAATAAGGAAAGTTACCTTCAACCGAACTGTGTCTCTGCACTTATTGAATATAATTTCCACCAGATAGCTTGTGGACACACAATGACTGTTGCCCTCACTACATCAGGTCATGTATTTACCATGGGAGGCACTGCATATGGTCAACTAGGAAATCCTTTGTCTGATGGAAGAGCACCCATCCTAGTTCAAGATAAGTTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGAGCGAATCATGTTGCTGTCTTGACATCAAGAAGTGAACTGTATACTTGGGGGAGAGGAGCAAATGGAAGATTGGGACATGGAGACATAGAAGACCGAAAAGCTCCAACATTGGTAGAGGGTTTGAAAGATAGACATGTAAAAAATATCTCATGTGGCTCAAACTTTACATCTTGTATATGCATCCATAAATGGGTCTCTGGAGCTGATCAATCTATTTGCTCAGGTTGTCGGCAAGCATTTGGTTTTACTAGGAAAAGGCATAATTGTTATAATTGTGGGTTAGTGCATTGTCATGCTTGTAGTTCCAAGAAAGCATTAAGAGCAGCATTGGCTCCAACACCAGGAAAACCGCATCGTGTATGTGATGCTTGTTATATTAAACTTAAAGCTACTGAATCTACTAGTAGTTCAACTTTTAATAGAAAGGTTACACCTCCTCGTCAATCCCTAGATCGAAATGAAAGATTAGACCGGGGAGAGGTAAGGTCTTCAAGAATTCTCATGTCTTCCATGACTGACCCAGTAAAATTCCTTGAGATATGGGGTAATAAGCCTGAATCTAAACATGATTTTTCTTCCTTAGTCCGAACTTCTCCATCAGTTTCACAATTCAAAGATGCAGCATTTCCAAGTTCATTGAAGCCCGTTCACAATGCTTTCAAGTCATCAAGTCCACCACGAACTCCACCTGCCAGTTCAAGACCTGCATCACCATATGCAAGAAGACCAAGCCCACCACGTACTGCCACCCCTGGATTTTCTAGAAGCATTATTGACAGCTTAAGAAAGACAAATGAGCTTCTGAACCAAGAAGTCTCAAAATTGCAGGACCAAATTCGAAGTTTAAAGAAGAAGAGTGACACACAAGGTTCAGAGATTACGAAGCTACAGAAAAATGTTAAGGAAGCTACTTCATTGGCTGGAGAGGAATATTCTAAGCATAGAGTAGCAAGGGAATTTATTAAATCAATGACAGACCAGttGAAAGATGTGACCCAGAATTTACCACCAGACCTTCCAGACAATGAGGCCTTGAAAACCATGCATACTCAAGCTGAAGATTTTCTAAATGAAAATCCAGAATCTGAAGCACCTTCCATACTATCAAGCTTAGAGTCTAACCAAGTTAATACACTTGATATAACTGCTGACAGTGACTGTTCTAAACTGCAAGAaaatagaatggaagaaactgCTGATGCTACTGAAGTTGAACCGTCTCAAGATGGAGGAAATTCTACTCAAGAAAGTAACAAATCAGCTGAATCTAGTGGAGAGGCAGCAGTTCCTCCACAAAGCTCAGAAAATGGTTCACAATCACCGGAGGACTCTACGAGAcctgggagagagagagaatcacAAGTGATCGAACAATTTGAGCCTGGAGTCTATGTGACACTAATAGTACGGCCAAATGGTAGCAAAGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTTGATGAGCATCAGGCAGAAGAATGGTGGAACAAAAACAAAGATAGAGTGTTTAGAAAATATAGTCCAACAGCTGCAAATAATGCAGCTACTGTGCCATCTAGCTCTCAACCTGTAGCTGAAGAAGTTGAGGCACCACAATCATGA 3279 0.4129 LSFVFGDFLTIVSDGMADLVSYGNPERDIEQALIALKKGTQLLKYNRKGKPKFRPFRLSSDASTLIWISHGREKNLKLSTVSRIIPGQRTAVFRRHLRPEKDYLSFSLIYKNGERSLDLICKDKAEVEIWFGGLKALISPRTLRTRSNLSDDVVDFFPNSRPFAATLEFTSSITRGRDSVDSGSRESPLSWVPSDVASERASMQLRAGASDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGEVWTDGISLDGSGSQIPSVTDVLVPKPLESNVVLDVQQIASGVRHITLVTRQGEVFSWGEECGGRLGHGIDKDFYQPHLIEFLAVHNVEFVACGEYHSCAVTTSGDLFTWGDGAHNAGLLGHGTNVSHWIPKRVTGPLEGLQVLSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDRKSVSYPKEVQSLSGLKTIKVACGVWHTAAIVEVMCQQGSNVSSWKLFTWGDGDKYRLGHGNKESYLQPNCVSALIEYNFHQIACGHTMTVALTTSGHVFTMGGTAYGQLGNPLSDGRAPILVQDKLVGEFVEEISCGANHVAVLTSRSELYTWGRGANGRLGHGDIEDRKAPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGADQSICSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYIKLKATESTSSSTFNRKVTPPRQSLDRNERLDRGEVRSSRILMSSMTDPVKFLEIWGNKPESKHDFSSLVRTSPSVSQFKDAAFPSSLKPVHNAFKSSSPPRTPPASSRPASPYARRPSPPRTATPGFSRSIIDSLRKTNELLNQEVSKLQDQIRSLKKKSDTQGSEITKLQKNVKEATSLAGEEYSKHRVAREFIKSMTDQLKDVTQNLPPDLPDNEALKTMHTQAEDFLNENPESEAPSILSSLESNQVNTLDITADSDCSKLQENRMEETADATEVEPSQDGGNSTQESNKSAESSGEAAVPPQSSENGSQSPEDSTRPGRERESQVIEQFEPGVYVTLIVRPNGSKVFKRVRFSKRRFDEHQAEEWWNKNKDRVFRKYSPTAANNAATVPSSSQPVAEEVEAPQS 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1787 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Sto12g1787 1092 Pfam FYVE zinc finger 621 686 IPR000306 GO:0046872
Sto12g1787 1092 Coils Coil 816 843 - -
Sto12g1787 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 402 IPR000408 -
Sto12g1787 1092 Pfam Transcription factor regulating root and shoot growth via Pin3 1011 1065 IPR013591 -
Sto12g1787 1092 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 694 IPR013083 -
Sto12g1787 1092 Gene3D - 360 464 IPR009091 -
Sto12g1787 1092 Gene3D - 204 359 IPR009091 -
Sto12g1787 1092 MobiDBLite consensus disorder prediction 952 1021 - -
Sto12g1787 1092 CDD PH_PLC_plant-like 27 139 - -
Sto12g1787 1092 SUPERFAMILY FYVE/PHD zinc finger 621 694 IPR011011 -
Sto12g1787 1092 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 27 1073 - -
Sto12g1787 1092 CDD FYVE_like_SF 631 683 - -
Sto12g1787 1092 MobiDBLite consensus disorder prediction 1068 1092 - -
Sto12g1787 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Sto12g1787 1092 Gene3D - 465 633 IPR009091 -
Sto12g1787 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 516 565 IPR000408 -
Sto12g1787 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 296 344 IPR000408 -
Sto12g1787 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 402 451 IPR000408 -
Sto12g1787 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Sto12g1787 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 347 398 IPR000408 -
Sto12g1787 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 467 513 IPR000408 -
Sto12g1787 1092 MobiDBLite consensus disorder prediction 773 812 - -
Sto12g1787 1092 Gene3D - 28 145 IPR011993 -
Sto12g1787 1092 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 27 1073 - -
Sto12g1787 1092 Pfam Pleckstrin homology domain 30 138 IPR001849 -
Sto12g1787 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Sto12g1787 1092 SUPERFAMILY PH domain-like 28 138 - -
Sto12g1787 1092 SUPERFAMILY RCC1/BLIP-II 236 622 IPR009091 -
Sto12g1787 1092 ProSiteProfiles BRX domain profile. 1011 1066 IPR013591 -
Sto12g1787 1092 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 441 451 IPR000408 -
Sto12g1787 1092 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
Sto12g1787 1092 MobiDBLite consensus disorder prediction 963 1001 - -
Sto12g1787 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 403 454 IPR000408 -
Sto12g1787 1092 PRINTS Chromosome condensation regulator RCC1 signature 405 419 IPR000408 -
Sto12g1787 1092 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Sto12g1787 1092 PRINTS Chromosome condensation regulator RCC1 signature 506 524 IPR000408 -
Sto12g1787 1092 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Sto12g1787 1092 PRINTS Chromosome condensation regulator RCC1 signature 348 364 IPR000408 -
Sto12g1787 1092 PRINTS Chromosome condensation regulator RCC1 signature 564 585 IPR000408 -
Sto12g1787 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 347 IPR000408 -
Sto12g1787 1092 SMART fyve_4 619 688 IPR000306 GO:0046872
Sto12g1787 1092 MobiDBLite consensus disorder prediction 694 715 - -
Sto12g1787 1092 Pfam Transcription factor BRX N-terminal domain 867 901 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1787 Sto-Chr12 13553311 13562811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1787 1014 1074 Major Intrinsic Protein MIP AT1G31880 39.344 6.78e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1787 12 13553311 13562811 Sto12g1787 12 13553311 13562811 ECH