Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1772 ATGCTTGATTCAAAGTTCATGAAATGTAAAGATGTTAAGGGAAATAGTGCACTTGAGAGAGCTAATGCTTTCAAATCTCAAAACCCATCTTTTGTGTGGGTTGCCAAACAATCATACATCCATGGTTCTGCTAACTTTGCCATACCATCCAACTTTGCCAGGAGCTTCTTGGGTTCAAGAAAGAATGGAGAAAGTACAAAGCTTGTGATGTTAGATGGAAGAGTTTGGGAGGCCAAATATATCATAAGGATAAAAAGTACAAAGACAGTAGTGTTTGAACTCTCTAGTGGTGGGTTTAGGGCATTAGCTAAGGCCAATGACCTTAAAGTTGGTGATGTTTGTGTCTTTGAATTTTTGGGAGGAACAACCATCACTTTTCAAGTTTTGATCTTTTGA 396 0.3813 MLDSKFMKCKDVKGNSALERANAFKSQNPSFVWVAKQSYIHGSANFAIPSNFARSFLGSRKNGESTKLVMLDGRVWEAKYIIRIKSTKTVVFELSSGGFRALAKANDLKVGDVCVFEFLGGTTITFQVLIF 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1772 131 Pfam B3 DNA binding domain 32 130 IPR003340 GO:0003677
Sto12g1772 131 ProSiteProfiles B3 DNA-binding domain profile. 31 131 IPR003340 GO:0003677
Sto12g1772 131 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 14 131 IPR044837 -
Sto12g1772 131 CDD B3_DNA 29 131 IPR003340 GO:0003677
Sto12g1772 131 Gene3D - 10 131 IPR015300 -
Sto12g1772 131 SMART B3_2 31 130 IPR003340 GO:0003677
Sto12g1772 131 SUPERFAMILY DNA-binding pseudobarrel domain 24 131 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1772 Sto-Chr12 13422342 13423532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1772 17 131 B3 DNA Binding Superfamily AT3G18990 29.310 6.67e-06 42.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto12g1772 B3 3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1772 - - lja:Lj1g3v3690290.1 93.9745