Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1766 ATGGGGCTCAAGAAGGGTCCTTGGACTCCTGAGGAAGATCAAATCTTGGTTTCTTATATCCACAAAAATGGCCATGGCAATTGGCGTGCCCTCCCTAAGCAAGCAGGTCTTTTAAGATGTGGGAAGAGCTGTAGATTGCGATGGATTAACTATTTACGCCCAGATATCAAGAGAGGCAACTTCacaagagaggaagaagaaactaTCATTAAGCTGCATGAGATGCTGGGAAATagGTGGTCAGCCATTGCAGCAAAATTACCCGGACGAACAGACAATGAAATAAAGAACGTTTGGCACACACATTTGAAGAAGAGGTTGTTGCTTCTTCAGAAACCAACCCAATCATCTGACTCATCACTACTAATTCCCAATAAAAGAGCCTCTTCTCACCAAAAAATAATGAAGAGGACACATTCCAATTCCAGCACAATAACTCACTCACAAGCAGCTTCAATTGAAGAAAGCAAAAATCTCATGAAAAATGTGAGCATTAAGAGGGAAGATAATAACACAGAGTGTTTGGAGACATTAATAGTGCCTGAAATTGAAGAAAGCTTTTGGTCAGAAGCAGCAATAATGGATGAGAAGAATACCACAAATGAGAAATACCCATTTGATTCTTATGGTTATAGTACAAATTATTACCATGATGAAGAATATGATGATGGCATGGATTTCTGGTATGACTTGTTCATCAGATCAGGAGATTCAACAGAATTGCCAGAGTTCTGA 735 0.3837 MGLKKGPWTPEEDQILVSYIHKNGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLLLQKPTQSSDSSLLIPNKRASSHQKIMKRTHSNSSTITHSQAASIEESKNLMKNVSIKREDNNTECLETLIVPEIEESFWSEAAIMDEKNTTNEKYPFDSYGYSTNYYHDEEYDDGMDFWYDLFIRSGDSTELPEF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1766 244 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 235 - -
Sto12g1766 244 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 235 - -
Sto12g1766 244 Pfam Myb-like DNA-binding domain 58 103 IPR001005 -
Sto12g1766 244 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Sto12g1766 244 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
Sto12g1766 244 SMART sant 4 54 IPR001005 -
Sto12g1766 244 SMART sant 57 105 IPR001005 -
Sto12g1766 244 Gene3D - 60 107 - -
Sto12g1766 244 CDD SANT 7 52 IPR001005 -
Sto12g1766 244 SUPERFAMILY Homeodomain-like 1 99 IPR009057 -
Sto12g1766 244 CDD SANT 60 102 IPR001005 -
Sto12g1766 244 Gene3D - 4 57 - -
Sto12g1766 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Sto12g1766 244 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Sto12g1766 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 107 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1766 Sto-Chr12 13346240 13352982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1766 1 244 MYB Transcription Factor Family AT2G31180 49.206 1.87e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g1766 Myb_DNA-binding 3.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1766 12 13346240 13352982 Sto12g1766 12 13346240 13352982 ECH