Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1751 AtggattcttcttcttcctcctctttcttCAACTCATCATCATCTCATAACTCCGACGTGTCTTCGGAATCTTCGTTCGgctcgccgccgccgccgccgtcgtGGAGTTTCGACCACGATCACTTCCCCTTCAACGAGAACGACCCCGAAGAGATGCTTCTGTTCGGCCTACTTTCCGAGGCCAACAATAAAACCCAAATGTTCAAAGAAGAGGAGGTGACCTCTTTCGGCGGCGGCGGATCGGAACCGCCGCCACAAGAGAGGAGGAATAACGCAAAGTCCTACCGGGGCGTGCGGCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCGACGAGGCATGGGATGCGAGTGTGGTTGGGGACGTTCGATAGCGCCGAGGCCGCGGCGTTGGCGTACGACGAGGCGGCTTTCGCCATGAGAGGACATAATGCAATATTGAATTTTCCGGTGGAGAGAGTGAGGGAGTCGttggagaagatgatgatgatgaagtgtGGTTCTGAAGAAGAAGGGGGTTCACCTGTGGTGGCTTTGAAGAGAAAGCATTCCATGAGAAGGAGAATTggtaagaataataataataataagattatTAAAGAGAGAGATCATAATGTGAAGGTGGTGTTGGAAGATCTAGGAGCAGAATACTTAGACCATTTATTGACAATTCGTCATTCACCTCACATTGTACCTTCGGCCGTGCCAGCGCCATCCATCCTCCGTTGCATCTTGCAGCAAGTGTAA 753 0.4555 MDSSSSSSFFNSSSSHNSDVSSESSFGSPPPPPSWSFDHDHFPFNENDPEEMLLFGLLSEANNKTQMFKEEEVTSFGGGGSEPPPQERRNNAKSYRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDEAAFAMRGHNAILNFPVERVRESLEKMMMMKCGSEEEGGSPVVALKRKHSMRRRIGKNNNNNKIIKERDHNVKVVLEDLGAEYLDHLLTIRHSPHIVPSAVPAPSILRCILQQV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1751 250 CDD AP2 93 153 IPR001471 GO:0003700|GO:0006355
Sto12g1751 250 ProSiteProfiles AP2/ERF domain profile. 94 152 IPR001471 GO:0003700|GO:0006355
Sto12g1751 250 MobiDBLite consensus disorder prediction 1 25 - -
Sto12g1751 250 Pfam AP2 domain 94 145 IPR001471 GO:0003700|GO:0006355
Sto12g1751 250 MobiDBLite consensus disorder prediction 71 96 - -
Sto12g1751 250 Gene3D AP2/ERF domain 93 154 IPR036955 GO:0003700|GO:0006355
Sto12g1751 250 SUPERFAMILY DNA-binding domain 94 154 IPR016177 GO:0003677
Sto12g1751 250 PANTHER DNA-BINDING DOMAIN 36 226 IPR044808 GO:0003700|GO:0009873
Sto12g1751 250 MobiDBLite consensus disorder prediction 1 43 - -
Sto12g1751 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 36 226 - -
Sto12g1751 250 SMART rav1_2 94 158 IPR001471 GO:0003700|GO:0006355
Sto12g1751 250 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Sto12g1751 250 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1751 Sto-Chr12 13158388 13161353 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1751 42 224 AP2-EREBP Transcription Factor Family AT3G23240 55.263 1.08e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto12g1751 AP2 5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1751 K14516 - cpap:110815870 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1751 12 13158388 13161353 Sto12g1751 12 13158388 13161353 ECH