Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1746 ATGGAGGAGGAGCAtcaaaagaagaaggaagaggagaAGCCGGCGGCGGGAGGGGTTCGATACCGAGGCGTCCGGCGTCGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGATCCGACGAAGCAAGGGACGAGGCTGTGGCTGGGGACATTTGGGACGGCGCAGGAAGCAGCAAGAGCTTATGATCGAGCTGCTTTTCAATTCAGAGTGCTCTGA 216 0.5556 MEEEHQKKKEEEKPAAGGVRYRGVRRRPWGKYAAEIRDPTKQGTRLWLGTFGTAQEAARAYDRAAFQFRVL 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1746 71 ProSiteProfiles AP2/ERF domain profile. 20 71 IPR001471 GO:0003700|GO:0006355
Sto12g1746 71 CDD AP2 28 69 IPR001471 GO:0003700|GO:0006355
Sto12g1746 71 PANTHER DNA-BINDING DOMAIN 5 69 IPR044808 GO:0003700|GO:0009873
Sto12g1746 71 SMART rav1_2 20 70 IPR001471 GO:0003700|GO:0006355
Sto12g1746 71 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 5 69 - -
Sto12g1746 71 Gene3D AP2/ERF domain 19 70 IPR036955 GO:0003700|GO:0006355
Sto12g1746 71 SUPERFAMILY DNA-binding domain 20 69 IPR016177 GO:0003677
Sto12g1746 71 Pfam AP2 domain 20 68 IPR001471 GO:0003700|GO:0006355
Sto12g1746 71 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Sto12g1746 71 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1746 Sto-Chr12 13116181 13116732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1746 20 69 AP2-EREBP Transcription Factor Family AT3G23230 80.000 2.58e-25 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto12g1746 AP2 7.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1746 - - fve:101298304 92.8189