Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1718 CTGGCTAACCCTTGGTGGACCGGTCAGGCTGTCGGGTTGTCCGGGATCGACCTGGCGGCCAATTCTCCAGCCTTAAACAAACGCCATGGCGCCATGGAGCTCTCGATCAATGAGAGCAAcgggaaaaataataatagtggtGGTAGTGACAACAGAGATGACGATGACGATAGAGATGATCCTAAAGAGGGCGCAGTAGAGGTTGGCAATCGTAGACCACGAGGTCGACCTCCCGGATCTAAAAATAAACCCAAACCGCCCATATTTGTGACCCGGGACAGCCCCAACGCACTTCGGAGTCATGTCATGGAGGTGGCGGGTGGATCCGATGTGGCCGAAAGCATGGCACAGTTTGCCAGACGACGTCAGCGTGGGGTTTGTGTGCTTAGTGGGAGTGGCTCAGTCGCCAACGTCACTCTTCGCCAACCCTCGGCACCCGGGGCCGTGGTTGCCCTACACGGAAGGTTTGAGATTCTATCCCTAACCGGGGCCTTCCTGCCCGGGCCGGCCCCACCCGGATCCACGGGACTCACGGTTTACCTTGCCGGAGGGCAAGGTCAGGTCGTCGGAGGAAGCGTGGTAGGGTCTCTTGTGGCGGCGGGGCCGGTGATGGTGATTGCTGCAACTTTTTCCAATGCTACTTATGAGAGGCTACCACttgatgatgaggaggaggcCGCTGCCGCACAGGGTGGCACAGGAGGGTCATCGCCTCCACCGTCGGGGATCGGAAGCAGTGGGGGCCACTTGCAAGGTGGAATTCCAGATCCTTCATCTCTTCCTTTGTATAATCTTCCACCAAATCTGCTGCCCAACGGCGGCGGGCAGGTCGGGCATCATGAGGCTCTTGCTTGGGCAGCTCATGGAAGGCCTCCTTACTAg 882 0.5601 LANPWWTGQAVGLSGIDLAANSPALNKRHGAMELSINESNGKNNNSGGSDNRDDDDDRDDPKEGAVEVGNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVAGGSDVAESMAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGAFLPGPAPPGSTGLTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFSNATYERLPLDDEEEAAAAQGGTGGSSPPPSGIGSSGGHLQGGIPDPSSLPLYNLPPNLLPNGGGQVGHHEALAWAAHGRPPY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1718 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 293 IPR014476 GO:0003680
Sto12g1718 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 224 - -
Sto12g1718 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 34 293 - -
Sto12g1718 293 MobiDBLite consensus disorder prediction 29 96 - -
Sto12g1718 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Sto12g1718 293 CDD DUF296 99 182 IPR005175 -
Sto12g1718 293 ProSiteProfiles PPC domain profile profile. 95 232 IPR005175 -
Sto12g1718 293 PIRSF ESCAROLA 12 293 IPR014476 GO:0003680
Sto12g1718 293 MobiDBLite consensus disorder prediction 225 260 - -
Sto12g1718 293 Gene3D - 98 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1718 Sto-Chr12 12826996 12827877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1718 1 293 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 63.051 6.80e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1718 - - var:108341460 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1718 12 12826996 12827877 Sto12g1718 12 12826996 12827877 ECH