Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1713 ATGGATGCTTATGTTCATTTGGAAGTGGTTTATGCCATGGCTTTTGCTTTGTCCATTTGTTTTCTACCTAGATCTGAAGATGAAGGCTCGGATGACTACCTACAATGGCAGTTTGTTGATCATATGGTGTTGTCCCGGACAATTAATTCCATGACAAAAGATTTTGCTGAAGCTTATATCTTCACACCTACTTCAAAGCAACTTTGGCTTGAATTGAAAGAGAAATATGGTACTGAAGATATGCCAAAGGTGTTCAACATACAAAAGAAGATGGTAACTTTGAGGCAAGATGGACAATCTTTAGCAACGTACTCAAATAATCTAAAGAAATTGTTTGAGCAGCTGAATTGTTTGCAGCGGAGACATAATTGTACATGTAGTGCACGAAAAGTTAGCAATGTTTTGATGATGGAACCTATTCCATCGTTGAGCAAAGTTTACTTAATTGTAACTAGAATTGAGATTCAGAAAGAGGACCTTTTGAGTAAAAGGATTTTGGATCTTGGAAAAGAACACAAGCATTTATATTTGTTGAATAAGGAAGAGATAGTCAATTGTAATGCTTGTACTGAGAaagggttgtatacttgtagAATTGATGAGAATAATGCCAATTGGCATGAAAGACTAGGACATCCTAGTTTTGTAGTATTAAGTAAACTGAGTTTTGTGAGGAACATTGATGAAAACAAAGTTTATGAGTCTCTTGTAGCGAACGAGGATTTTCAGCACATTCTTCGTGTTCTGAACACGAACGTCGATGGTAAGCAGAGGATTATGTTCGCCCTTACCTCCATCAAAGGTATTGGTCGCCGCTTCGCCAATATCGTCTGCAAGAAAGCCGACGTTGACATGAACAAGagAGCTGGTGAAATAAGTGCTGCTGAACTTGATCAACTGATGACCATTGTGGCAAATCCACGCCAATTCAAGATTCCGGATTGGTTTCTCAATAGGAAGAAGGATTATAAGGATGGCAAATACTCTCAGGTTGTTTCAAACGCATTGGACATGAAGCTCAGGGATGATCTTGAGCGTTTGAAGAAGATAAGAAACCACCGTGGTCTGAGACACTACTGGGGTCTTCGCGTTCGTGGACAGCACACAAAGACCACTGGACGCCGGGGCAAGACTGTCGGTGTCTCTAAGAAGCGCTGA 1158 0.3946 MDAYVHLEVVYAMAFALSICFLPRSEDEGSDDYLQWQFVDHMVLSRTINSMTKDFAEAYIFTPTSKQLWLELKEKYGTEDMPKVFNIQKKMVTLRQDGQSLATYSNNLKKLFEQLNCLQRRHNCTCSARKVSNVLMMEPIPSLSKVYLIVTRIEIQKEDLLSKRILDLGKEHKHLYLLNKEEIVNCNACTEKGLYTCRIDENNANWHERLGHPSFVVLSKLSFVRNIDENKVYESLVANEDFQHILRVLNTNVDGKQRIMFALTSIKGIGRRFANIVCKKADVDMNKRAGEISAAELDQLMTIVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1713 385 ProSiteProfiles Ribosomal protein S13 family profile. 248 378 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto12g1713 385 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 235 385 - -
Sto12g1713 385 Hamap 30S ribosomal protein S13 [rpsM]. 245 385 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto12g1713 385 SUPERFAMILY S13-like H2TH domain 246 381 IPR010979 GO:0003676
Sto12g1713 385 Pfam Ribosomal protein S13/S18 247 375 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto12g1713 385 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 235 385 - -
Sto12g1713 385 Gene3D 30s ribosomal protein s13, domain 2 325 375 IPR027437 -
Sto12g1713 385 Coils Coil 101 121 - -
Sto12g1713 385 Gene3D - 234 313 - -
Sto12g1713 385 ProSitePatterns Ribosomal protein S13 signature. 354 367 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1713 Sto-Chr12 12761374 12768891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1713 235 385 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 95.364 2.12e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1713 K02964 - qsu:112019340 294.664