Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1695 ATGAAGGAGACTGAGTTATGTTTGGGATTGGGACTTCCTGGTGATGAAGTAGGAGTGGTGGAAACTCCAAAGGGTAATATTGGAAATAAGAGGGCTTTTTCTTCAACTGTGGATTTCAAgcttaattttgttcatgatgatgatgatgatgaaagctGTAATAATAAGGAAGATaatgatggagaagaagaagaagatctgAGTTTAAAGAATGCCTCTAAAAAGGACACCAATACCCTTCTCAAGGACCCTTCTAAGCCACCTGCCAAgGCACAAGTGGTGGGATGGCCACCAGTGAGATCATACAGGAAGAATGTGATGACACAAAAAGTGAAGAATAGTGGTGAAACAATGGAGGGAAAGAGTAGTAATAATGATCAAAAGATGacaacttcatcttcttcttcactatCATTTGTGAAGGTAAGTATGGATGGAGCTCCATACCTTAGGAAAGTGGACTTGAAGATGTTCACTAGCTACCAACAATTATCTGATGCCTTGGCCAAAATGTTTAGCTCCTTTACTATGGGTAATTATGGATGTGAAGGAATGATAGATTTCATGAATGAGAGTAAGTTGATGGATCTTCTGAATAGTTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGATTGGATGCTTGTGGGTGATGTCCCTTGGGAGATGTTCGTTGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCCGAGGCTATTGGGCTTgTCGTGTCATCACTTCTTGATGCTCCTTCCGCCTCCTTCTGGTCTTTCTCTTCCAGGAAGCGCAAAATCTGGTCCAGTTTGGAGATTAAGTCTGGCTCCGGATTTTTGCTTCAGGAGGGGCAGAAGAAGATGCTACATTCTGAGCAGGAGATGACGGAGATTTTCTCGACCTCTAGTGCCCTCCAGATAAGTCTGAATTCCAATGTAGTTAACTAG 945 0.3862 MKETELCLGLGLPGDEVGVVETPKGNIGNKRAFSSTVDFKLNFVHDDDDDESCNNKEDNDGEEEEDLSLKNASKKDTNTLLKDPSKPPAKAQVVGWPPVRSYRKNVMTQKVKNSGETMEGKSSNNDQKMTTSSSSSLSFVKVSMDGAPYLRKVDLKMFTSYQQLSDALAKMFSSFTMGNYGCEGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLVVSSLLDAPSASFWSFSSRKRKIWSSLEIKSGSGFLLQEGQKKMLHSEQEMTEIFSTSSALQISLNSNVVN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1695 314 PANTHER AUXIN-RESPONSIVE PROTEIN IAA14 1 248 - -
Sto12g1695 314 ProSiteProfiles PB1 domain profile. 137 237 IPR000270 GO:0005515
Sto12g1695 314 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 248 IPR003311 GO:0005634|GO:0006355
Sto12g1695 314 MobiDBLite consensus disorder prediction 66 81 - -
Sto12g1695 314 MobiDBLite consensus disorder prediction 109 132 - -
Sto12g1695 314 Gene3D - 131 248 - -
Sto12g1695 314 MobiDBLite consensus disorder prediction 51 65 - -
Sto12g1695 314 MobiDBLite consensus disorder prediction 45 93 - -
Sto12g1695 314 SUPERFAMILY CAD & PB1 domains 130 236 - -
Sto12g1695 314 Pfam AUX/IAA family 8 244 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1695 Sto-Chr12 12519549 12530278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1695 111 249 B3 DNA Binding Superfamily AT2G46530 30.216 8.82e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto12g1695 AUX_IAA 6.2e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1695 K14484 - pvy:116130817 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1695 12 12519549 12530278 Sto12g1695 12 12519549 12530278 ECH