Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1644 ATGGTAGGATTGGAACTCATACCAGTGGGTACAATTTTGGCTGTGCTTACAAACCAGGTTTTGAAAACAGCCAATGCAGCAGCAGAAGTTCTTGTggaaaaagaaattttcaagGTCCTTTCACAACACTTGTACGATATTGAACCGGTCCTGAAGGAATTACAGCTTCAAGAACTGAATGAGTCTCAAGCTGCAAGAACTGCGTTGGAGTCTCTCGAAGAAGATGTTAAGAGGGCGAATAAAGTGGTTGATAAGTACAGGAACCGTGGCCGGTTCTACTTGCTGGTTAAGTGCAGACACATAGTTCATGAAGTTGAGGAAGTCACAAGAAGAATTGGCAAGTCCCTGGCTGTACTTTCATTTGCAAACACCGAAGTCCTATCACGAATCTCCGATCAAGTCCATAGGTTGCAAAACGAGATGCAAAGAGTGGAGTTTGAGGCATCACAATCCCAGCTTCAAATTGTGGACAAGTTGAATCAAGGCCTCAAGGAACAAAAGCTAGATCAAGCTTTTGCTAATGACATGCTTGAGGAAATAGCCAGAGCCGTTGGTGTACCGGTCGAGCCCTCAGAGATAAGCAAAGAGCTTGCTAGCTTTAGAAGGGAAAAGGAAGAAGCAGCAAACAGGAAGGAAAGAGCTGAAGTGTTCTTCTTGGAGCAGGTCATTGAATTACTGTCTCGAGCCGATGCTGCAAGAGACTATGAAGAAGTTAAGAAGCAATACTTCGAAAGAGTTCAAGTAATAGAACGATACGACTCGAGGGAGAAGTATATAATGCCGCTTAAGTCCTTCCTTTGTTGTATAACTGAAACTGTTATGGTAGATCCAGTAAGCCTATGCACCGGCACGACGTGTGAGAGATCTGCAATTGAAGCTTGGTTTGATAGTGGCAACAGGACCGACCCGGAAACGAAAGAAGTACTCGAAGATACGAAGTTGAGATCGAATGTTCCACTAAGACAATCCATTGAAGAGTGGAGAGAACTTAATTACTGTCTCACAATCAGATCCATTAGGGAAAACCTTTTGTTGAATTCTAACTTGTCTGTGCTAGAATCCTCGAGTCAAGTGCAGGATCTCATAAGAGAGAACTCTATTAACAAGGATTGGATTTCTGTAGGAGAGGTTACAGACAGAATTATCTCTATTCTTGGGAACTCTAATAATAGAGAAGTGAAGATCAAGATTTTGAATACATTGAAGGATGTAGTAGCAGGGCATACAAGAAACAAGGAAAAACTCGCCGAATCTCAAGGATGGGATCACATAATTTGCTGCTTAGGAAGTGACTCTAGCATTTCAAAGGCAGCAATTTTTCTGCTGTATGAGTTACTGCAAGATCGATCTTGTTGGAATGTCTCGCTTTGTAGAAAACTCTCTCAGCATCACAGTGCAATCTCCTTCCTTGTTACCCTCCAAAAGGGTCCAGTGCAGGAGTCAGCTGAGGTTGCAGAGAAGATTTTGATCGAGCTTTTCGACATAGACGAGGGAAATATCTCTACTGCAGCTAAGGTTGGCTGGTATAAACCACTCGTAGATCGTATGGTTCAAGGAGCAGAATCTTCAAGAATATCAATGGCAAAAACCATTCATAATATGGAACTGAATGATacaaatttagaacttcttggcCAAGAAGGAGCTATACCTCCTTTGCTTGAAATGCTGTCTGGTAGTATTGAATCAAAAGAATTGTCATTATCTGCACTTGTTAAGCTATCAGGTTGTCATTCCAATAAAGGGATTATAGCTGCATCCGGAGGCGTTCCTCTTATCCTAGAACTAATGTTCTCTCCTCGAATTCGAACATTCATCACCATTAAATGCTCCGAAATCCTCGAGAAGCTTTCCGCCGATGGTGATGGAATCGGTTTCTTTGTTGATGGAGAAGGGAAACAACTAGAGTTAGACTCCATCATCACCAAGTTGCTTGCTCTTCAGCAGAATCCCAACTCGGCTCACAATGTCCGTAAGCCTGCATTGCGCGCGCTTCTCGGGATTTGCAAGTTCGAGACCGGATTAGTCAAGAAGGCCGTTCTGGCTGCGAATGGCGTGTCTCTTATACTTCCCCTTCTTGATGATTCCGATTCGGAAATAAGGGAAACTGCCATAAATCTCCTCTTCCTTTTCTCCCAGCATGAACAGGAAGGAGTAGTGGAATACCTCTTCAGGCCGAGAAGGCTAGAGGCTTTGGTTGGGTTTCTTGagaatgatgataatgatgtacgAATGGCTGCTGCCGGTTTACTGGCGAACTTACCGAAATCCGAAAAGGAGCTCACTATGAAGCTGATTGAGTTGGGTGGCCTTGATGCAATCATTAGTATTCTAGAAACTGGCACAATGGAAGCAAAAGAAAATGCTCTGAGCGCGCTCTTCCGGTTCACGGATCCCACGAACATTGAGTCACAGCGCGATCTAGTGAAGCGTGGGATATACCCTTTGCTTGTGAATTTCCTCAACACAGGTTCAGTAACAGCAAAGGCTAGAGCAGCAGCATTCATTGGTGATCTTTCTCTGAGTACTCCGAACCTCACTTTTACCATGGCCGAATCAAGCGGCTGCTGGTGGTGTTTTCGTTCATCAAGAGTCCCTCTATGCGCGGCACACGGTAGTATCTGTAGCGTGAGTAACACGTTTTGTCTTCTTGAAGCCCAAGCTTTGCCTGGCTTGGTGAGGCTCTTACACGGGGAGGTCGATGCTGCTGCTTACGAGGCGATACAGACACTTTCTACGTTGGTTTTGGAAGATTATCCTCAAAGGGGAGCTCGAGTTTTGCACGAATCCGACGCGATAAAGCCACTTCTGGAGATTTTGACATGGGGGACTGAATCTCTCAAGGCCGAGGCTTTAGGACTCTTGGAGAAGATCTTTGTGTCCAAGGAAATGGTGGAATACTACGGCACGACGGCTCGATTGCGGCTTATTAGCTTGACTGGGAAGAACATATATGGAGATGGCCACCTCAGGAGGAAGGCTGCCAAGGTATTGTCGTTGCTCGAACGCTATTCGAAGTCGTCGTCTTCGGCTATTTCAGGAGTTTTGGAGTGA 3054 0.4411 MVGLELIPVGTILAVLTNQVLKTANAAAEVLVEKEIFKVLSQHLYDIEPVLKELQLQELNESQAARTALESLEEDVKRANKVVDKYRNRGRFYLLVKCRHIVHEVEEVTRRIGKSLAVLSFANTEVLSRISDQVHRLQNEMQRVEFEASQSQLQIVDKLNQGLKEQKLDQAFANDMLEEIARAVGVPVEPSEISKELASFRREKEEAANRKERAEVFFLEQVIELLSRADAARDYEEVKKQYFERVQVIERYDSREKYIMPLKSFLCCITETVMVDPVSLCTGTTCERSAIEAWFDSGNRTDPETKEVLEDTKLRSNVPLRQSIEEWRELNYCLTIRSIRENLLLNSNLSVLESSSQVQDLIRENSINKDWISVGEVTDRIISILGNSNNREVKIKILNTLKDVVAGHTRNKEKLAESQGWDHIICCLGSDSSISKAAIFLLYELLQDRSCWNVSLCRKLSQHHSAISFLVTLQKGPVQESAEVAEKILIELFDIDEGNISTAAKVGWYKPLVDRMVQGAESSRISMAKTIHNMELNDTNLELLGQEGAIPPLLEMLSGSIESKELSLSALVKLSGCHSNKGIIAASGGVPLILELMFSPRIRTFITIKCSEILEKLSADGDGIGFFVDGEGKQLELDSIITKLLALQQNPNSAHNVRKPALRALLGICKFETGLVKKAVLAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEQEGVVEYLFRPRRLEALVGFLENDDNDVRMAAAGLLANLPKSEKELTMKLIELGGLDAIISILETGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSLSTPNLTFTMAESSGCWWCFRSSRVPLCAAHGSICSVSNTFCLLEAQALPGLVRLLHGEVDAAAYEAIQTLSTLVLEDYPQRGARVLHESDAIKPLLEILTWGTESLKAEALGLLEKIFVSKEMVEYYGTTARLRLISLTGKNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1644 1017 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1014 - -
Sto12g1644 1017 Gene3D - 353 503 IPR011989 -
Sto12g1644 1017 SUPERFAMILY ARM repeat 519 959 IPR016024 -
Sto12g1644 1017 Gene3D - 504 655 IPR011989 -
Sto12g1644 1017 Gene3D - 861 1012 IPR011989 -
Sto12g1644 1017 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Sto12g1644 1017 Coils Coil 127 154 - -
Sto12g1644 1017 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1014 - -
Sto12g1644 1017 SMART arm_5 758 798 IPR000225 GO:0005515
Sto12g1644 1017 SMART arm_5 715 756 IPR000225 GO:0005515
Sto12g1644 1017 SMART arm_5 920 960 IPR000225 GO:0005515
Sto12g1644 1017 SMART arm_5 876 916 IPR000225 GO:0005515
Sto12g1644 1017 SMART arm_5 673 713 IPR000225 GO:0005515
Sto12g1644 1017 SMART arm_5 408 447 IPR000225 GO:0005515
Sto12g1644 1017 SMART arm_5 801 841 IPR000225 GO:0005515
Sto12g1644 1017 SMART arm_5 577 619 IPR000225 GO:0005515
Sto12g1644 1017 SMART arm_5 537 576 IPR000225 GO:0005515
Sto12g1644 1017 Coils Coil 62 89 - -
Sto12g1644 1017 SUPERFAMILY ARM repeat 367 669 IPR016024 -
Sto12g1644 1017 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Sto12g1644 1017 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 335 IPR013083 -
Sto12g1644 1017 Gene3D - 656 857 IPR011989 -
Sto12g1644 1017 Gene3D - 9 126 IPR036537 GO:0007166
Sto12g1644 1017 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Sto12g1644 1017 CDD RING-Ubox_PUB 265 307 IPR045210 -
Sto12g1644 1017 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 754 IPR000225 GO:0005515
Sto12g1644 1017 SUPERFAMILY RING/U-box 249 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1644 Sto-Chr12 11969071 11973823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1644 263 974 U-box Gene Family AT1G76390 28.218 9.07e-47 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1644 - - gmx:100816935 1542.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1644 12 11969071 11973823 Sto12g1644 12 11969071 11973823 ECH