Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1621 ATGCCAGTGAGACAAATGAAAGAAAGCTCAGAGCAGCATCTTGTGATCAAAACCCACTTGCAAAACTCCATGAATCCAGCGAAGAAAGCACCCAAAACTGTCCAAAACGGCAAAGGTcctccaccgccgccgccgcaaGAACCCCACAACGTCAAACCCCATAGCCAACCTTCTCCTCAGGCGAAgaacagaggaagaagaaggagccGAGGTGGCCGAAAGTCTGATCAAGGAGATGCTCTGATGCGACCCACTTGCCGACCTTGCACTATTCTGGTGCCAAATACTGCTAATGGGTCTGCTGGAAATGGCGGCCACAACTCTTGTGATGTAGTGATGGGGTTTCCTACTTCAAGCAAATCCTTGAGCTTCGCTCCCCGGCCTGGATACGGACAAGTTGGGACAAAATGCATAGTGAAGGCTAACCATTTCTTTGCAGAGTTACCGGACAAGGACTTGAACCAGTATGATGTCACTATTACCCCTGAAGTTTCATCTAGAACAGTAAACAGGGCCATTATGGCAGAACTTGTGAGACTGTACAAAGAGTCTGACCTGGGGATGAGACTTCCTGCATATGATGGCAGAAAAGGTCTGTACACAGCAGGGGAGCTTCCCTTTGCTTGGcgagaatttaaaattaagctTGTAGATGAAGAGGATGGGGTTAATGGTCCCAAGAGGGAAAGAGAATACAGAGTGGTGATCAAATTTGTTGCTCGGGCAAACTTGCATCACTTGGGCCAGTTTCTTGCAGGTAAGCGTGCTGATGCTCCGCAAGAGGCCCTCCAGATTCTTGACATTGTACTAAGAGAGCTATCGACTAAGAGGTTTTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCACAACGGCTTGGAGAGGGATTGGAATCATGGTGTGGATTTTACCAGAGCATTAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCTTCTGCTGCATTTATTGAGCCTCTTCCAGTGGTGGAATTTGTTGGCCAGCTATTAGGAAAAGATGTGTTGTCAAGGCCATTGTCTGATGCTGATCGTGTAAAGATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGGAGTGTACGAAGAAAATACCGTGTTTCAGGATTGACATCTCAACCAACGAGAGAACTTgtGTTTCCCGTTGATGACAATTCAACTATGAAATCAGTAGTTGAATACTTCCAAGAGATGTATGGTTTCACAATTCAATATACTCATCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCAAATTATTTGCCTATGGAGGCATGCAAAATTGTTGAGGGGCAACGTTATACAAAAAGGCTGAATGAGAAGCAAATTACTGCTTTGCTGAAAGTTACTTGCCAGAGACCCCGTGATCGGGAAAATGACATCTTGCGGACTCTTCAGCATAATGCTTATGATCAAGATCCATATGCAAAGGAGTTTGGGATTAAGATCAGTGAAAAACTAGCTTCTGTTGAAGCTCGAATTCTTCCTGCCCCTTGGCTGAAATATCATGACACTGGGAAAGAAAAGAACTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGGATGACAGTTAGCCGGTGGGCATGCATAAATTTTTCACGGAATGTGCAAGATAGTGTTGCTCGCAGTTTTTGTAATGAACTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAACCTGTTATACCAATATACAATGCCAAGCCTGAGCAGGTGGAGAAAGCTTTAAAACATGTTTACCATGTGTCAATGAACAAAACAAAAGGAAAGGAATTAGAACTTCTATTAGCAATATTGCCTGACAACAATGGATCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCGCAATGCTGCCTGACAAAGCATGTCTTTAAGATCACTAAACAATATTTGGCTAATGTATCTCTGAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTTGATGCTATAAGCTGCAGAATACCATTGGTTAGTGACATTCCAACCATAATATTTGGAGCAGATGTTACCCACCCTGAAAATGGAGAAGACTCCAGTCCCTCAATAGCAGCTGTAGTAGCTTCCCAAGACTGGCCTGAAGTGACAAAATATGCCGGTTTAGTGTGTGCTCAAGCTCACAGACAGGAACTTATTCAAGATTTGTACAAAACTTGGCATGATCCTGTTCGCGGCACAGTTAGTGGTGGCATGATCCGAGACTTGTTGGTCTCCTTTAGGAAGGCAACAGGACAGAAGCCACTACGGATTATATTTTACAGGGATGGTGTAAGCGAAGGGCAATTTTACCAAGTTTTACTTTATGAGCTGGATGCAATCCGGAAGGCATGTGCTTCTTTAGAGCCAAACTATCAGCCTCCAGTAACTTTTATTGTTGTACAAAAAAGACATCATACTCGGTTGTTTGCAAACAACCACAGGGACAGGAGCAGCACAGATAAGAGTGGGAATATATTGCCTGGGACTGTTGTTGATTCTAAAATCTGTCATCCCACAGAATTTGATTTTTATCTCTGCAGTCATGCAGGCATCCAGGGGACAAGTCGGCCAGCTCATTATCATGTTCTATGGGATGAGAACAACTTCACAGCGGATGGAATTCAGTCATTGACAAACAATCTCTGTTATACATATGCTAGGTGTACACGCTCTGTATCTGTTGTTCCTCCTGCATACTATGCTCATCTAGCAGCATTCCGAGCCCGTTTCTATATGGAACCAGACATGCAGGAGAATGGCTCTACTGGCGGTGGCAGTGCCGGCCATGGTTCTAAAGGAACAACACGAGCAGCCGGGGAGTGTGGGGTCCGGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGGGTAATGTTTTATTGTTAG 2967 0.4291 MPVRQMKESSEQHLVIKTHLQNSMNPAKKAPKTVQNGKGPPPPPPQEPHNVKPHSQPSPQAKNRGRRRSRGGRKSDQGDALMRPTCRPCTILVPNTANGSAGNGGHNSCDVVMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRAIMAELVRLYKESDLGMRLPAYDGRKGLYTAGELPFAWREFKIKLVDEEDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRVKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTLQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRNVQDSVARSFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTGGGSAGHGSKGTTRAAGECGVRPLPALKENVKRVMFYC 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1621 988 MobiDBLite consensus disorder prediction 36 52 - -
Sto12g1621 988 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 63 987 - -
Sto12g1621 988 SUPERFAMILY PAZ domain 326 486 IPR036085 GO:0005515
Sto12g1621 988 Pfam PAZ domain 358 462 IPR003100 GO:0005515
Sto12g1621 988 Pfam Argonaute linker 1 domain 280 329 IPR014811 -
Sto12g1621 988 SUPERFAMILY Ribonuclease H-like 610 942 IPR012337 -
Sto12g1621 988 ProSiteProfiles Piwi domain profile. 620 941 IPR003165 GO:0003676
Sto12g1621 988 Pfam Argonaute linker 2 domain 472 518 IPR032472 -
Sto12g1621 988 Pfam Mid domain of argonaute 529 606 IPR032473 -
Sto12g1621 988 SMART Piwi_a_2 620 941 IPR003165 GO:0003676
Sto12g1621 988 CDD Piwi_ago-like 490 940 IPR045246 -
Sto12g1621 988 Pfam N-terminal domain of argonaute 136 270 IPR032474 -
Sto12g1621 988 MobiDBLite consensus disorder prediction 945 965 - -
Sto12g1621 988 SMART DUF1785_2 279 331 IPR014811 -
Sto12g1621 988 CDD PAZ_argonaute_like 331 445 - -
Sto12g1621 988 ProSiteProfiles PAZ domain profile. 332 446 IPR003100 GO:0005515
Sto12g1621 988 MobiDBLite consensus disorder prediction 1 83 - -
Sto12g1621 988 Gene3D - 689 988 IPR036397 GO:0003676
Sto12g1621 988 SMART PAZ_2_a_3 336 468 IPR003100 GO:0005515
Sto12g1621 988 Gene3D - 510 683 - -
Sto12g1621 988 Gene3D paz domain 325 450 - -
Sto12g1621 988 MobiDBLite consensus disorder prediction 15 30 - -
Sto12g1621 988 Pfam Piwi domain 621 940 IPR003165 GO:0003676
Sto12g1621 988 PANTHER PROTEIN ARGONAUTE 10 63 987 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1621 Sto-Chr12 11627660 11635621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1621 1 988 Eukaryotic Initiation Factors Gene Family AT5G43810 83.183 0.0 1672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1621 K11593 - vvi:100244311 1818.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1621 12 11627660 11635621 Sto12g1621 12 11627660 11635621 ECH