Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1620 ATGAAGCTTGTTCAGTCTGAAGAAACCGATTCCGAACCCCGCGAGTTTCCCGAGGAAGCCGAAGGAAAGGAAGCCCCGGGAAGCTCCTCTTTGGTTGGAGGAGGCAATGACCGTGGCGTTGATAATGGAGATGCGGTTCTCGATGTCTCTGGGAAAACTGTGGAGTTCCCCGAATTGGAGAACGCTGAGGATTCCGTGGAGGGGTTGTATTTTTATAAGAATGTTTACAATTTGATCCCCAAGTCTTTGGGAGGTCTTGGACGGTTGAGGACGTTGAAGTTTTTTGGAAATGAGATTAATTTATTTGCCCCCGAGTTTGGGAACTTGATGGGGTTGGAGTGCTTGCAGATGAAGATATCCTCGCCAGGGATTGGTGGGTTGCCGTTGCATAAGTTAAAGGGTTTGAAGGAGCTTGAGCTATCCAAAATGCCTCCTCGGCCTTCTGCTTTCCCTATATTGACCGAGATTGCTGGTCTTAAGTGCTTGACCAAACTATCTATTTGTCACTTCTCTATTAGATATCTTCCTCCTGAAATTGGCTGCCTAAAGAAACTGGAGTATCTCGATCTTTCATTCAACAAGATGAAGTCACTGCCATCTGAAATCAGTTATTTGAATGACTTGATATCTTTGAAAGTTTCTAATAATAAGTTGGTGGAACTACCGTCAACTATGTCCTCTCTGTCAAGGCTGGAGAACTTGGACTTGTCAAATAATAGATTGACATCATTGGGTCCTCTTGAGCTTGGGTCTATGCATAAACTTCAGAGTTTAAATCTTCAGTACAATAAGCTGCTCAACATAATCCAAATACCTTCATGGATTTGCTGCAATATGGAAGGAAATGACATGGGCGGATGCAGTGATGATTTTAGCAGCTCTTCTGTTGAAATGGATGTCTATGAAACGAGTTTACAGGAGAATGATGGAATAATTTTGCATGgtTCTCATAGTACCTCATCAAGCCTATTAAATAGCTCCTCATCTAGTAGTAGATGTTTTGCAGCCCGAAAATCAGGTAAAAGGTGGAAGCGGCGGCATTATTTACAGCAGAAAGCCCGTCAAGAATGTTTAAACAACAGCAGGAAGTGGAAAGGTTTAGATAATTCTCAGTTGCTAAGTAAGAAGATGCATAGAATATGCGAACCAGAAAACCTGGACAGTCTGGCTTCTGAAAATTGCAGGGAAACTGTAACAGACAATGTGATTCTGGATGACGATGCTAATAAAATATTCAGAGAAGAAGCAGGGAATGACAATGTTATTGATAATGTTAACAATAACGAAGTGGGTATTGAAAAGCAGCCATCTAAAGAAGAATTCTGCTCTAGTGACAGTAAAGATGAAAAGGATGGTTCCTTATACCCGTTAGAGAATGAGTCTAGTGAGCAGGACAAAGCATCAAGTTCAGAGATTTTGAAGTGTTCTAAATCAAAGAGGCATTCAGATAGGGATCTTGATAATCCTAAACCATGCAAGTCGAGAAAACCAATTGGTGATAGCTCATTGTTGTCGCACAAGTACAGTAGCTTATCATTTTGTGGTATTGAAGACCATCTGCCAGATGGCTTTTATGATGCAGGACGTGATCGGCCCTTTATGCCTCTCGAGAGTTATGAGCAAAATCAGTGTCTTGCCTCTCGTGAAGTCATCTTATTGGACAgAGAAAGGGATGAAGAATTGGATGCTATCACACTCTCTGCTCAGGCATTGGTGTTTCATTTGAAGCAGTTAAATGATTTTACCAGGCATCGGAATCAGGCTGCTGTTGATAACCTCCAGATCGCATCACTGCTTGCACTCTTTGTATCAGATCATTTTGGGGGCAGTGATAGAAGTTCTATTGTAGAAAGGACTCGAAAATCAGTCTCTGGATCAAATTATCATAAGCCTTTTGTTTGTACATGCTCAACTGGAAGCAACAGTGATATTACTGCTTCCACTAAACCAGTTGTGAACAGTGTAGGAGATATCACCCTTACTAACATCTGTGAAAAATCTCTtgattccataaaaaaaagacGCAGTTCAATCATAGTTCCTATTGGAACTGTGCAGTTTGGTGTATGTAGACATAGAGCTCTGCTTTTCAAGTATTTATGTGATCACATGGAGCCACCTGTTCCTTGTGAGCTTGTCAGGGGTTTCCTGGATTTTTCACCACATGCCTGGAACACAATCATAGTTAACAGAGGTGATAAACAGGTTCGAATGCTAGTTGATGCATGTCGGCCGCATGATAtaagagaagaggaagaccCTGAGTTCTTTTGCAGGTATATACCTCTTAGTCGAACCAAAGTCCCTCTTTCAACTGATGGAAATCCTGGTCTTGGTTGTTCTTTTCCATCTCTCTCTACATGTGACAAATTTGAGAAGGCAGCTTTGAGTTCTTTAGTTCGGTGCAAACTTGGATCAGTGGAGGCTGCAGCAAAGGTGCGTAATTTGGAAGTGCGGGAGAATTCACCagagaaaattaaaaactttGAATATAATTGTTTGGGAGAAGTGAGAATTCTACATGCTTTGAAACATCCTTGTATTATTGAAATGTATGGACACCAAATATCTTACCAGTGGACGCTTGCAGCTGATGGTAATCCTGAGCATTGTGTATTAAGGTCTGCAATTTTTATGGAGTACATTGAAGGGGGCTCATTAAGAAACTATCTAGATAAGCTATCAAAAGCTGGTGAAAAGCATGTTCCAGTAGAGTTGGCTTTGTATATTGCCAAAGATGTAGCACATGCTTTGTCAGAGCTGCACTCGAAGCACATAATACATCGTGACATAAAAAGTGAAAATATTCTGATTGATTTGGATAGAAAGAAAGATGATGGCACCCCCACTGTGAAGCTTTGTGATTTTGATAGTGCAGTGCCACTAAGATCACCTTTGCATAAATGCTGTATTGCTCATGTGGGAGCACCTCCTCCTTATGTATGTGTTGGAACACCTCGTTGGATGGCTCCAGAGGTCATGCGGACTATGTATAAAGAAATTACTTATGGATTGGAAGCTGATATTTGGTCATTCGGATGTTTACTCCTGGAGCTGCTGACTCTGCAAATTCCATATTCTGGGGTGCCTGATTTACAGTTCCATGACATGCTGCAGCTGGGTAAACCACCACAATTAACTGATGAGCTGGAGGCACTGAGTTCAATGAATGAACCCACAATGATTCAATCCGGGGAAGAGCCGGAAAAATCCGATACCGAGGTAGACATGTTGAAGTTCCTGATCGATTTGTATCATAGGTGTGTAGAAGAAAATCCAGCCAAACGTCCTACAGCTGAGAAAATCTATGAGATGTTGCTTGCACACAGAGGCAGCCTACAAGTACAAGATGTTGGAAAGAGTTAG 3366 0.4109 MKLVQSEETDSEPREFPEEAEGKEAPGSSSLVGGGNDRGVDNGDAVLDVSGKTVEFPELENAEDSVEGLYFYKNVYNLIPKSLGGLGRLRTLKFFGNEINLFAPEFGNLMGLECLQMKISSPGIGGLPLHKLKGLKELELSKMPPRPSAFPILTEIAGLKCLTKLSICHFSIRYLPPEIGCLKKLEYLDLSFNKMKSLPSEISYLNDLISLKVSNNKLVELPSTMSSLSRLENLDLSNNRLTSLGPLELGSMHKLQSLNLQYNKLLNIIQIPSWICCNMEGNDMGGCSDDFSSSSVEMDVYETSLQENDGIILHGSHSTSSSLLNSSSSSSRCFAARKSGKRWKRRHYLQQKARQECLNNSRKWKGLDNSQLLSKKMHRICEPENLDSLASENCRETVTDNVILDDDANKIFREEAGNDNVIDNVNNNEVGIEKQPSKEEFCSSDSKDEKDGSLYPLENESSEQDKASSSEILKCSKSKRHSDRDLDNPKPCKSRKPIGDSSLLSHKYSSLSFCGIEDHLPDGFYDAGRDRPFMPLESYEQNQCLASREVILLDRERDEELDAITLSAQALVFHLKQLNDFTRHRNQAAVDNLQIASLLALFVSDHFGGSDRSSIVERTRKSVSGSNYHKPFVCTCSTGSNSDITASTKPVVNSVGDITLTNICEKSLDSIKKRRSSIIVPIGTVQFGVCRHRALLFKYLCDHMEPPVPCELVRGFLDFSPHAWNTIIVNRGDKQVRMLVDACRPHDIREEEDPEFFCRYIPLSRTKVPLSTDGNPGLGCSFPSLSTCDKFEKAALSSLVRCKLGSVEAAAKVRNLEVRENSPEKIKNFEYNCLGEVRILHALKHPCIIEMYGHQISYQWTLAADGNPEHCVLRSAIFMEYIEGGSLRNYLDKLSKAGEKHVPVELALYIAKDVAHALSELHSKHIIHRDIKSENILIDLDRKKDDGTPTVKLCDFDSAVPLRSPLHKCCIAHVGAPPPYVCVGTPRWMAPEVMRTMYKEITYGLEADIWSFGCLLLELLTLQIPYSGVPDLQFHDMLQLGKPPQLTDELEALSSMNEPTMIQSGEEPEKSDTEVDMLKFLIDLYHRCVEENPAKRPTAEKIYEMLLAHRGSLQVQDVGKS 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1620 1121 Pfam Ethylene-responsive protein kinase Le-CTR1 661 741 - -
Sto12g1620 1121 ProSiteProfiles Leucine-rich repeat profile. 230 251 IPR001611 GO:0005515
Sto12g1620 1121 Gene3D Ribonuclease Inhibitor 46 288 IPR032675 -
Sto12g1620 1121 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 67 1109 - -
Sto12g1620 1121 SUPERFAMILY RNI-like 69 286 - -
Sto12g1620 1121 MobiDBLite consensus disorder prediction 1 22 - -
Sto12g1620 1121 PANTHER BNAC08G43810D PROTEIN 67 1109 - -
Sto12g1620 1121 ProSiteProfiles Leucine-rich repeat profile. 184 205 IPR001611 GO:0005515
Sto12g1620 1121 MobiDBLite consensus disorder prediction 464 494 - -
Sto12g1620 1121 SUPERFAMILY Protein kinase-like (PK-like) 797 1106 IPR011009 -
Sto12g1620 1121 SMART LRR_bac_2 182 201 - -
Sto12g1620 1121 SMART LRR_bac_2 205 224 - -
Sto12g1620 1121 SMART LRR_bac_2 228 247 - -
Sto12g1620 1121 SMART LRR_sd22_2 228 249 - -
Sto12g1620 1121 SMART LRR_sd22_2 182 207 - -
Sto12g1620 1121 SMART serkin_6 785 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1620 1121 ProSitePatterns Serine/Threonine protein kinases active-site signature. 926 938 IPR008271 GO:0004672|GO:0006468
Sto12g1620 1121 Pfam Leucine rich repeat 210 265 IPR001611 GO:0005515
Sto12g1620 1121 SMART LRR_typ_2 252 278 IPR003591 -
Sto12g1620 1121 SMART LRR_typ_2 86 108 IPR003591 -
Sto12g1620 1121 SMART LRR_typ_2 228 251 IPR003591 -
Sto12g1620 1121 SMART LRR_typ_2 182 205 IPR003591 -
Sto12g1620 1121 Gene3D Transferase(Phosphotransferase) domain 1 791 1118 - -
Sto12g1620 1121 MobiDBLite consensus disorder prediction 422 498 - -
Sto12g1620 1121 MobiDBLite consensus disorder prediction 433 456 - -
Sto12g1620 1121 PRINTS Leucine-rich repeat signature 185 198 - -
Sto12g1620 1121 PRINTS Leucine-rich repeat signature 228 241 - -
Sto12g1620 1121 Pfam Protein kinase domain 825 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1620 1121 ProSiteProfiles Protein kinase domain profile. 785 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1620 1121 MobiDBLite consensus disorder prediction 1 44 - -
Sto12g1620 1121 ProSiteProfiles Leucine-rich repeat profile. 254 275 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1620 Sto-Chr12 11585244 11594735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1620 791 1108 MAP Kinase Kinase Kinase AT2G24360 29.560 5.69e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Sto12g1620 Pkinase 8.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1620 - - gmx:100819959 1619.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1620 12 11585244 11594735 Sto12g1620 12 11585244 11594735 ECH